CN182264
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14 Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231 G + W D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 196 GNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14 Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14 Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14 Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL + T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+ +DGR I V++A Sbjct: 10 GGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13 Identity = 32/73 (43.84%), Postives = 53/73 (72.60%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231 G L+W D +L FS G ++E+++I DR++GRS+GFGFVT+ + +++AI+ ++G +LDGR I V+EA+ Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13 Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL + T + L +AF+ YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 10 GGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13 Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231 G L+W D +L F+ G ++E+++I DR++GRS+GFGFVT + ++ AI +NG +LDGR I V+EA+ Sbjct: 262 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228 GGL + T + +L + FS++G I E ++ DRET RSRGFGF+TF + + DA+ MNG++LDGR I V+ A Sbjct: 11 GGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13 Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 Query: 13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231 GGL+ T + SL +AFS++ + E++++ ++ TGRSRG+GFV F E S AI MNGQ L+G NI+VN A+ Sbjct: 36 GGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108 The following BLAST results are available for this feature:
BLAST of CN182264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182264 ID=CN182264; Name=CN182264; organism=Citrus sinensis; type=EST; length=637bpback to top |