CN182264

Overview
NameCN182264
Unique NameCN182264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231
            G + W   D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  196 GNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL + T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:   10 GGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 32/73 (43.84%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231
            G L+W   D +L   FS  G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL + T +  L +AF+ YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   10 GGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231
            G L+W   D +L   F+  G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  262 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 228
            GGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:   11 GGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CN182264 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 231
            GGL+  T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   36 GGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
The following BLAST results are available for this feature:
BLAST of CN182264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ROC3_NICSY4.004e-1446.5828 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CIRBP_RAT4.004e-1450.00Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE4.004e-1450.00Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR4.004e-1450.00Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA5.230e-1451.39Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
ROC1_ARATH1.165e-1343.84Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
CIRBA_XENLA1.165e-1350.00Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC2_ARATH2.595e-1343.8429 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM3_MOUSE2.595e-1348.61Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RT19_ARATH5.782e-1347.9540S ribosomal protein S19, mitochondrial OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002C23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182264 ID=CN182264; Name=CN182264; organism=Citrus sinensis; type=EST; length=637bp
TTTGGGCTCGAAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTT
TGGTTAATTGTTTGAAAAAAAAAATGAAATGAATCCT
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