CN188960

Overview
NameCN188960
Unique NameCN188960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELS-SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 548
            M R R E+K +E+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL  F +SSSM + +++Y   N  +     + + +L+L+    +Y  L  +        R + GEEL  L+  EL+ LE+ L+  L ++  T+ Q  ++ ++ELQ K   L+E N  L+ +   +  A
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPA 176          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQ-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            MGR +VE+K +ENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M K ++RY+         +    EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E N+TL
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-------IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTL 160          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25
Identity = 73/212 (34.43%), Postives = 123/212 (58.02%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF-CSSSSMVKTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANK----TLKQRTMTLRHAAFAGLQLME-----GYQVNTLQLN 605
            MGRG++E+K +EN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++ C S  +   L++YQK +    + A   N+S           E  ++K   ++LQ   R+L GE++  LN K L ++E  ++  L ++R     + ++ L   +  E++++E  +     L+Q+ M +   A  G+ + +     GY+V  +Q N
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS----------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR----DHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNA-RGMMMRDHDGQFGYRVQPIQPN 197          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 67/170 (39.41%), Postives = 100/170 (58.82%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS-MVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            MGRG++E+K +EN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS  + M + ++RY   N G   P+    +  +L  + E L+ +     L+   R   G +L  +   EL+ LERQL+ S+ ++R  + + M   L  L  K ++L E N  +
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTN-GLRLPD-HHDDQEQLHHEMELLRRETC--NLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNM 166          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 62/159 (38.99%), Postives = 97/159 (61.01%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 485
            MGRGRVELK +EN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S    +  + +RY K    AP       + ++    QE  ++K     L+   R  +G++L  L  +++ +LE+Q++ SL ++R  + Q +   L E+  +
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK----APSTRFEEMD-VQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 62/174 (35.63%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 521
            MGRG++E+K +EN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ GK++EFCS S+++V  L+ Y K         +S +   +   +    E  ++K   +++Q   R+L GE++  LN KEL  LE  L+     +++ + ++    +  ++   +++ E N++L+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK---------LSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQ 161          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/170 (38.82%), Postives = 101/170 (59.41%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            M RG++++K +EN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+EF S S   K L + YQK         V    +     Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E ++ L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK------TVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNL 164          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 65/183 (35.52%), Postives = 102/183 (55.74%), Query Frame = 3
Query:   18 RGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQ 566
            R R+ ++ ++N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  GKL++F +S+SM + ++RY   +        S  + L+        +LK          R + GEEL  LN ++L+ LE+ L+  L  +  T+++ +LD +  L+ K   L E N  LK++    R +    +Q
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQF-ASTSMEQIIDRYNSHSKTLQRAEPSQLD-LQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQ 202          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            MG+G++E+K +E+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS    V  +E + +         +      +     E  +L+   + L+ S R   GE+L  +++  EL  L+ QL+ SL ++ + + + M   L +++   Q + E N  L
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPP--VILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168          
BLAST of CN188960 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 70/203 (34.48%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   12 MGRGRVELKTLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERY--QKCNYGA--PEPNV--------------SAREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFA 557
            M R R E++ +E+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L+ +   +  A  A
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLA 202          
The following BLAST results are available for this feature:
BLAST of CN188960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD22_ORYSJ5.774e-2538.89MADS-box transcription factor 22 OS=Oryza sativa s... [more]
AGL31_ARATH5.774e-2540.00Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
PIST_ARATH9.849e-2534.43Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
TT16_ARATH1.286e-2439.41Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD31_ORYSJ4.888e-2438.99MADS-box transcription factor 31 OS=Oryza sativa s... [more]
GLOB_ANTMA4.888e-2435.63Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS1_PETHY8.338e-2438.82Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD47_ORYSJ8.338e-2435.52MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD30_ORYSJ9.218e-2334.12MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD55_ORYSJ5.975e-2234.48MADS-box transcription factor 55 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188960 ID=CN188960; Name=CN188960; organism=Citrus sinensis; type=EST; length=687bp
CGTTGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGACCCTAGAGAAC
AAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAA
GAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCA
TTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATG
GTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGC
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAAC
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