CN188956

Overview
NameCN188956
Unique NameCN188956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_SALPK (Galactokinase OS=Salmonella paratyphi A (strain AKU_12601) GN=galK PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.774e-11
Identity = 42/135 (31.11%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:  163 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKV-LKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTA 564
            F ++F  P     + PGRVNLIGEH DY    VLP AI   T+++    D +    +     N +D++++       D +      QW +Y     K   +   A G       G+D+++ G VP G+GLSSS +
Sbjct:   11 FAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRTVRVIAADYDNQADEFSLDAPIVTHDSQ------QWSNYVRGVVKHLQQRNNAFG-------GVDMVISGNVPQGAGLSSSAS 132

HSP 2 Score: 23.483 bits (49), Expect = 4.774e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_SALPA (Galactokinase OS=Salmonella paratyphi A GN=galK PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.774e-11
Identity = 42/135 (31.11%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:  163 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKV-LKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTA 564
            F ++F  P     + PGRVNLIGEH DY    VLP AI   T+++    D +    +     N +D++++       D +      QW +Y     K   +   A G       G+D+++ G VP G+GLSSS +
Sbjct:   11 FAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRTVRVIAADYDNQADEFSLDAPIVTHDSQ------QWSNYVRGVVKHLQQRNNAFG-------GVDMVISGNVPQGAGLSSSAS 132

HSP 2 Score: 23.483 bits (49), Expect = 4.774e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_ESCF3 (Galactokinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=galK PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.774e-11
Identity = 43/163 (26.38%), Postives = 74/163 (45.40%), Query Frame = 1 
Query:  145 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 633
            +   S F   F  P     + PGRVNLIGEH DY    VLP AI   T+++    D +    +      +D  N     +     +  +++QW +Y     +   ++++ +    G   G+D+++ G VP G+GLSSS +   +    L   + + +   +IA
Sbjct:    5 EKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRNVRVM-----AADYENQLDEFSLDAPIVAHENYQWANY----VRGVVKHLQLRNNSFG---GVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIA 155

HSP 2 Score: 23.483 bits (49), Expect = 4.774e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_ECOSM (Galactokinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=galK PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.774e-11
Identity = 43/163 (26.38%), Postives = 75/163 (46.01%), Query Frame = 1 
Query:  145 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 633
            +   S F   F  P     + PGRVNLIGEH DY    VLP AI   T+++    D ++   +      +D  N     +     +  + +QW +Y     +   ++++ +  + G   G+D+++ G VP G+GLSSS +   +    L   + + +   +IA
Sbjct:    5 EKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRKVRVM-----AADYENQLDEFSLDAPIVAHESYQWANY----VRGVVKHLQLRNNNFG---GVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIA 155

HSP 2 Score: 23.483 bits (49), Expect = 4.774e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_CITK8 (Galactokinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=galK PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.774e-11
Identity = 43/141 (30.50%), Postives = 65/141 (46.10%), Query Frame = 1 
Query:  145 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKV-LKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTA 564
            +   S F ++F  P     + PGRVNLIGEH DY    VLP AI   T+++    D ++   +     N  D++++       D +      QW +Y     K   +   A G       G D+++ G VP G+GLSSS +
Sbjct:    5 EKTQSLFAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCATRDDRKVRVIAADYDNQVDEFSLDAPIVTHDSQ------QWSNYVRGVVKHLQKRNNAFG-------GADLVISGNVPQGAGLSSSAS 132

HSP 2 Score: 23.483 bits (49), Expect = 4.774e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_STAS1 (Galactokinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=galK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 1 
Query:  151 LNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKI-ANVSDKYNMCTYPAEPDQEIDI-KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            ++ KF  +F    DV A  PGR+NLIGEH DY G  V P AI   T        SK  ++++++ +N  +   + ++  +   E++  + H W +Y     K   +Y+K +  D+    G +ILV+G +P G+ LSSS +    +   +   F + + + ++ +L
Sbjct:    5 MHKKFESLFDVKADVRAFAPGRINLIGEHTDYNGGYVFPAAIELGTYGLA----SKRTDRIIQLYSNNFEDTGIVSFTLD---ELEFNEQHDWANY----PKGVVKYLKEEFNDINQ--GFNILVEGNIPNGASLSSSASIELLTGWLIKQLFNLHLERLQLIKL 156
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_LACRJ (Galactokinase OS=Lactobacillus reuteri (strain JCM 1112) GN=galK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 1 
Query:  157 SKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAI----------RQDTIVAIRKHDS-KEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            +++  VF +P       PGR+N+IGEH DY G  V P AI          R+DT VAI   +S KE +  +   +++D         EP    + K  +W +YF    K    Y+K +G  +    G ++ + G +P GSGLSSS +        L   F +++ + E+ +L
Sbjct:    8 AEYQDVFKEPGKDVFFSPGRINVIGEHTDYNGGHVFPCAISIGTYGVYGPREDTTVAIYSANSAKEEDSKIITFDIND--------TEPQ---NAKDEKWVNYF----KGMLVYLKQRGFKIDH--GFNLYIHGFLPYGSGLSSSASIEMLMGNILKDEFNLDIDEIELVKL 162
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_LACRD (Galactokinase OS=Lactobacillus reuteri (strain DSM 20016) GN=galK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 1 
Query:  157 SKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAI----------RQDTIVAIRKHDS-KEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            +++  VF +P       PGR+N+IGEH DY G  V P AI          R+DT VAI   +S KE +  +   +++D         EP    + K  +W +YF    K    Y+K +G  +    G ++ + G +P GSGLSSS +        L   F +++ + E+ +L
Sbjct:    8 AEYQDVFKEPGKDVFFSPGRINVIGEHTDYNGGHVFPCAISIGTYGVYGPREDTTVAIYSANSAKEEDSKIITFDIND--------TEPQ---NAKDEKWVNYF----KGMLVYLKQRGFKIDH--GFNLYIHGFLPYGSGLSSSASIEMLMGNILKDEFNLDIDEIELVKL 162
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_SALAR (Galactokinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=galK PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.043e-11
Identity = 43/135 (31.85%), Postives = 63/135 (46.67%), Query Frame = 1 
Query:  163 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKV-LKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTA 564
            F +VF  P     + PGRVNLIGEH DY    VLP AI   T+++    D +    +     N  D++++       D +      QW +Y     K   +   A G       G+D+++ G VP G+GLSSS +
Sbjct:   11 FAEVFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRTVRVIAADYDNQVDEFSLDAPIVTHDSQ------QWSNYVRGVVKHLQQRNNAFG-------GVDMVISGNVPQGAGLSSSAS 132

HSP 2 Score: 23.483 bits (49), Expect = 8.043e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
[Close]
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_ECOLU (Galactokinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=galK PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.043e-11
Identity = 43/163 (26.38%), Postives = 74/163 (45.40%), Query Frame = 1 
Query:  145 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 633
            +   S F   F  P     + PGRVNLIGEH DY    VLP AI   T+++    D  +   +      +D  N     +     +  +++QW +Y     +   ++++ +    G   G+D+++ G VP G+GLSSS +   +    L   + + +   +IA
Sbjct:    5 EKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDHKVRVM-----AADYENQLDEFSLDAPIVAHENYQWANY----VRGVVKHLQLRNNSFG---GVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIA 155

HSP 2 Score: 23.483 bits (49), Expect = 8.043e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2 
Query:  656 QFIGTQSGGMDQAISIMAK 712
            QF+G   G MDQ IS + K
Sbjct:  164 QFVGCNCGIMDQLISALGK 182
The following BLAST results are available for this feature:
BLAST of CN188956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GAL1_SALPK4.774e-1131.11Galactokinase OS=Salmonella paratyphi A (strain AK... [more]
GAL1_SALPA4.774e-1131.11Galactokinase OS=Salmonella paratyphi A GN=galK PE... [more]
GAL1_ESCF34.774e-1126.38Galactokinase OS=Escherichia fergusonii (strain AT... [more]
GAL1_ECOSM4.774e-1126.38Galactokinase OS=Escherichia coli (strain SMS-3-5 ... [more]
GAL1_CITK84.774e-1130.50Galactokinase OS=Citrobacter koseri (strain ATCC B... [more]
GAL1_STAS15.095e-1128.48Galactokinase OS=Staphylococcus saprophyticus subs... [more]
GAL1_LACRJ6.655e-1130.23Galactokinase OS=Lactobacillus reuteri (strain JCM... [more]
GAL1_LACRD6.655e-1130.23Galactokinase OS=Lactobacillus reuteri (strain DSM... [more]
GAL1_SALAR8.043e-1131.85Galactokinase OS=Salmonella arizonae (strain ATCC ... [more]
GAL1_ECOLU8.043e-1126.38Galactokinase OS=Escherichia coli O17:K52:H18 (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188956 ID=CN188956; Name=CN188956; organism=Citrus sinensis; type=EST; length=716bp
ACGGATTGAGTAGTCGACGGTCAAGTAAAGGTCAAACTAGAAAAAAAAAT
GGCGAGGCACGAAGAATTACCAGTGCCGACTTTTTGGTCACTGAAGGCAG
TGTACGGAGAAGGATTGCAGCTGGAAGAGGCTGAACGTCGTTTCGATAAC
TTGAATTCAAAGTTCATTCAAGTCTTTGCTCAGCCTCCCGATGTCTACGC
GCGATGTCCAGGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAG
GATATTCTGTACTGCCAATGGCGATTCGGCAAGACACAATCGTGGCAATA
AGGAAGCACGATTCAAAAGAGGCTGAAAAGGTTCTTAAAATAGCTAATGT
TAGTGACAAGTACAATATGTGTACTTATCCTGCTGAACCTGATCAGGAAA
TTGACATAAAGCATCATCAATGGGGCCACTATTTCATTTGTGGATATAAA
GCTTTTTATGAATATGTTAAAGCTAAAGGATTGGATGTTGGTCCACCGGT
TGGACTTGATATTCTTGTTGATGGCACGGTTCCAACAGGTTCTGGGCTAT
CCAGCTCCACAGCATTTGTTTGCTCTTCAACGGTTGCTCTTATGGCTGCT
TTCGGCGTGGAAGTTCCAAAGAAAGAGATTGCGCAACTTACATGTGAAAT
GTGAACAATTTATTGGAACACAGTCTGGTGGGATGGACCAGGCAATCTCT
ATCATGGCCAAATCTG
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