CN188950

Overview
NameCN188950
Unique NameCN188950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:188..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188950 vs. ExPASy Swiss-Prot
Match: TCTP_BRABE (Translationally-controlled tumor protein homolog OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = -2
Query:  177 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVD-IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 677
            M++Y+D+++GDE+ SD++  K +++   +E+EGK   + G +D   IG N S                  +IV   RLQE   F K  +  Y+K + K +   L++   ER + FK       K ++    + QFF GE M  DG +    Y+E    P  L+  D L+E K
Sbjct:    1 MIIYKDIVSGDEMFSDAYKMKVLDD-YFYELEGKITTEKGGIDESAIGGNASAEDAVEGLEESGTTG--CNIVIAQRLQETQ-FTKAQYKVYIKDYSKKVLEYLTKNKPERVDGFKAASAAGMKRVMGNFKNWQFFTGEKMDQDGMVALMDYREDGKTPYMLFFKDGLEEEK 168          
BLAST of CN188950 vs. ExPASy Swiss-Prot
Match: TCTP_EMENI (Translationally-controlled tumor protein homolog OS=Emericella nidulans GN=AN0641 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 54/179 (30.17%), Postives = 84/179 (46.93%), Query Frame = -2
Query:  177 MLVYQDLLTGDELLSDSFPYKEIENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFD---------KKPFVTYMKRFIKLLTPK-LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 677
            M++Y+D+++GDE+LSD++  K ++ G+L+E +  K++ +   D ++ GANPS              V V DI D FRL    A D         K    TYMK+ +K L  K   +E    FKK    A   +L    +    +GESM  D   +   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDTYNIKTVD-GVLYECDCRKYLKKTNEDFELEGANPSAEGGDDEGGAEGGEVMVHDIEDQFRLVWLKAEDGAKPPKDAFKGHLKTYMKKVLKALQDKGAPDETINEFKKGAPAAVNKILKNYDNYDVLMGESMDGDAMHILIDFREDGVTPYATLWKHGLEEMK 178          
BLAST of CN188950 vs. ExPASy Swiss-Prot
Match: TCTP_LUMRU (Translationally-controlled tumor protein homolog OS=Lumbricus rubellus GN=TCTP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 55/172 (31.98%), Postives = 82/172 (47.67%), Query Frame = -2
Query:  177 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAV--DVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEER---QEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 677
            M++++D+  G EL SDSFP   + N  +++V+GK         D  IG N S                 VDIV   RL E  A  KK ++T++K ++K +  KL E +    E+F+KN++   K +L+   + Q F GESM  +G L  A  K     P   +    L E K
Sbjct:    1 MIIFKDVFPGVELFSDSFPVSLV-NETVYKVKGKLRTDTFAIDDKAIGGNASAEGGEEGTDAASKQG--VDIVMNSRLVEY-ALSKKDYMTHIKSYMKSVKDKLQETKPADSELFQKNVQPFIKEVLNDFKEYQLFCGESMGPEGML--ALMKWDGETPYMFFFKHGLDEEK 166          
The following BLAST results are available for this feature:
BLAST of CN188950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TCTP_BRABE8.241e-1230.23Translationally-controlled tumor protein homolog O... [more]
TCTP_EMENI5.342e-1130.17Translationally-controlled tumor protein homolog O... [more]
TCTP_LUMRU6.977e-1131.98Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B10_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188950 ID=CN188950; Name=CN188950; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTTTTAAGAGCAGAAAAACATATTGTTTATGTCAAAAT
AAAAACTAAAAAACAGCAAGCACAAGTCCCGAGTAAACCAGCACAAAAGA
TACATAAAAATAACCGCGGGCAATAATTAAAATTAGAACTACAGCAGGCA
CTTCCTCTTCGAAGCCCAGCTTAGCACTTCACCTCCTTCAATGCATCAGC
CATATACAAAAATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGA
CAAGACAGCCATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCA
CTGAGCTTCGAGAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAA
TATCTCCTGCCTCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATC
TCTTCATGTATGTTACAAACGGCTTCTTGTCAAAAGCGGGTTGCTCCTGT
AGCCTGAATGTGTCGACAATGTCAACCACCTTCACGGCTTGGTCATCAAC
ACCCTCATCCTCATCAGCTCCTTCGGCAGAAGGATTTGCACCAATGTCAA
CATCAACGGCTCCTTGTACAACCCACTTTCCCTCAACTTCCCACAGAATC
CCATTCTCAATTTCCTTGTAGGGAAAAGAATCGGAGAGAAGCTCATCACC
GGTGAGGAGATCTTGATAGACCAACATGATTGCAGTCTCTCTCGCGAACA
CAAAAAAGAAAAATAATCAACGGAGAAAACTGGAG
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