CN188947

Overview
NameCN188947
Unique NameCN188947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2694 contig Csv1_Contig2694:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_PONAB (Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62
Identity = 122/205 (59.51%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_HUMAN (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62
Identity = 122/205 (59.51%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_BOVIN (Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62
Identity = 122/205 (59.51%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDVQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.700e-62
Identity = 127/216 (58.80%), Postives = 159/216 (73.61%), Query Frame = 3
Query:    3 GYPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD---DEDETMPPGDA 641
            G+P+ +V  PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ QIQ VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV QGC+KPLCDLL   DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI  LQ H N + +EK  +++ TY  D   DE + MP G +
Sbjct:  291 GHPTIAVQTPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTYLEDEQEDEGDLMPEGSS 503          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA5_DANRE (Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.750e-62
Identity = 120/205 (58.54%), Postives = 157/205 (76.59%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS   K+SIKKEACWTVSNITAGNR QIQAVI++N+   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV    IKP+CDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ +++ED ++ P
Sbjct:  310 VVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSP-KESIKKEACWTVSNITAGNRAQIQAVIDSNVFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLNTIKPMCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEEDASIVP 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA5_RAT (Importin subunit alpha-6 OS=Rattus norvegicus GN=Kpna5 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.493e-61
Identity = 117/200 (58.50%), Postives = 153/200 (76.50%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 620
            V+ PALR VGNIVTGDD+QTQ ++   ALPCLL+LL G+ K+S++KEACWT+SNITAGNR QIQAVI+ +I   L+ +L+ AEF  +KEAAWAI+NATSGG  EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E       +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +ED+
Sbjct:  310 VVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLL-GSPKESVRKEACWTISNITAGNRMQIQAVIDGSIFPVLIEVLQKAEFRTRKEAAWAITNATSGGAPEQIRYLVTLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGERESKQNGVGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIERYFGVEEDD 508          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_RAT (Importin subunit alpha-1 OS=Rattus norvegicus GN=Kpna1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.546e-61
Identity = 120/205 (58.54%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+AN+   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANMFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRNGSGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_MOUSE (Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.546e-61
Identity = 120/205 (58.54%), Postives = 156/205 (76.10%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+AN+   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANMFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRNGSGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_CHICK (Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.675e-61
Identity = 120/205 (58.54%), Postives = 154/205 (75.12%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS   K+SIKKEACWT+SNITAGNR QIQ VI+A+I   L+ +L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E       +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +DED ++ P
Sbjct:  312 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDAHIFPALINILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALSGLENILRLGEQESKRSGAGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIAP 515          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_YEAST (Importin subunit alpha OS=Saccharomyces cerevisiae GN=SRP1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.055e-59
Identity = 125/217 (57.60%), Postives = 157/217 (72.35%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE---DETMPPGDA 641
            + S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct:  310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNA 525          
The following BLAST results are available for this feature:
BLAST of CN188947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IMA1_PONAB3.928e-6259.51Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 ... [more]
IMA1_HUMAN3.928e-6259.51Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 ... [more]
IMA1_BOVIN3.928e-6259.51Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE... [more]
IMAB_DICDI6.700e-6258.80Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA5_DANRE8.750e-6258.54Importin subunit alpha-6 OS=Danio rerio GN=kpna5 P... [more]
IMA5_RAT1.493e-6158.50Importin subunit alpha-6 OS=Rattus norvegicus GN=K... [more]
IMA1_RAT2.546e-6158.54Importin subunit alpha-1 OS=Rattus norvegicus GN=K... [more]
IMA1_MOUSE2.546e-6158.54Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 ... [more]
IMA1_CHICK9.675e-6158.54Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1... [more]
IMA1_YEAST9.055e-5957.60Importin subunit alpha OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188947 ID=CN188947; Name=CN188947; organism=Citrus sinensis; type=EST; length=737bp
GCGGTTACCCTTCTCCTTCAGTGCTTATACCTGCTCTTCGCACAGTTGGC
AATATAGTCACCGGGGATGATATGCAAACTCAGTGCGTTATCGAATATCA
AGCACTGCCGTGCCTTCTTAATCTGTTGTCGGGCAATTATAAAAAGAGCA
TTAAAAAGGAAGCTTGTTGGACTGTCTCGAATATCACCGCTGGCAACAGG
GAGCAAATTCAGGCTGTGATTGAGGCTAACATAATTGGCCCCCTTGTTGC
TCTACTTGAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCATGGGCTA
TCTCAAACGCCACATCTGGTGGTACTCATGAGCAAATAAAATTCCTTGTG
ATTCAAGGGTGCATCAAGCCCTTGTGTGATCTTCTTGTATGTCCCGATCC
AAGAATTGTTACCGTCTGTCTGGAAGGGCTTGAGAACATATTGAAGGTGG
GAGAAGCCGAAAAGAATTTGGGCAACACAGATGTAAATGTCTTTACTCAA
ATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAGTTTACAAACTCA
CGACAATGCTGAGATTTATGAGAAGTCTGTAAAGCTTCTGGAAACATATT
GGTTGGATGACGAGGATGAGACAATGCCACCAGGGGATGCTTCTCAACCT
GGTTTCGGATTTGGAGGCAATGGGAATCCTCCTGCTCCATCTGGTGGCTT
CAATTTCAGCTAGAGGAGTTTTAGCTGCTTTCATGTT
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