CN188947

Overview
NameCN188947
Unique NameCN188947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2694 contig Csv1_Contig2694:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 112/212 (52.83%), Postives = 151/212 (71.23%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            +PS  V  PALR+VGNIVTGDD+QTQ +I   AL  LL+LLS   +  ++KEACWT+SNITAGN  QIQ VIEANII PL+ LL  A+F I+KEA WAISNATSGG    +QI++LV QG IKPLC+LL C D +I+ V L+G+ENIL+VGE ++      +N++   ++DA G++ I   Q   N+EIY+K+  ++E ++  +DE E + P
Sbjct:  301 HPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSSP-RDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIENILRVGELDRANNPDKINLYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEP 511          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 104/204 (50.98%), Postives = 148/204 (72.55%), Query Frame = 3
Query:    9 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 614
            PS ++  PALR+VGNIVTG D QTQ +I+  AL    +LLS + K++I+KEACWT+SNITAGN +QIQA+IE+N+I PLV LL  A++  KKEA WAISNATSG  G  +QI++LV QG IKPLCD+L   D +I+ V L+ +ENILKVGE ++ +   ++N +   +++A G++ I  LQ+  N +IY K+  ++E Y+ D++
Sbjct:  302 PSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLS-HQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDED 504          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA_DROME (Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43
Identity = 97/203 (47.78%), Postives = 134/203 (66.01%), Query Frame = 3
Query:   15 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 620
            PS+++PALR+VGNIVTG D QT  VI    LP L  LL  N K +I KEA WTVSNITAGN++QIQAVI+A I   L  +LE  +F  +KEAAWA++N T+ GT EQI  L+ +   +KP  DLL   DPR + V   GL N+  + E    LG T+      M+++  GL+K+E+LQ H+N E+Y+K+  +++TY+ + +DE
Sbjct:  296 PSIIVPALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHN-KSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAE---KLGGTE--NLCLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDE 492          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.647e-42
Identity = 95/211 (45.02%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 647
            ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   ++  LV++L  A+F  +KEA WA++N TSGGT EQI +LV  G I+PL +LL   D +I+ V L+ + NI    +A + LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct:  309 IVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIF---QAAEKLGETE--KLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSE 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_MOUSE (Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.457e-42
Identity = 97/211 (45.97%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 647
            ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ V L+ + NI    +A + LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct:  309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---QAAEKLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA4_HUMAN (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.822e-41
Identity = 90/200 (45.00%), Postives = 132/200 (66.00%), Query Frame = 3
Query:   33 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE-KNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMP 629
            ALR VGNIVTG D QTQ V+   AL     LL+ + K+ I KEA W +SNITAGN++Q+QAVI+AN++  ++ LL+  +F  +KEAAWAISN T  G  +Q+ +L+ Q  I P C+LL   D ++V V L+GL NILK+ E E + +GN        +I++  GLEKIE LQ H+N +IY+ + ++++ ++  D+ +  P
Sbjct:  304 ALRAVGNIVTGTDEQTQVVLNCDALSHFPALLT-HPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDEAETIGN--------LIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDP 494          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA4_MOUSE (Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 3
Query:   33 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMP 629
            ALR VGNIVTG D QTQ V+   AL     LL+ + K+ I KEA W +SNITAGN++Q+QAVI+AN++  ++ LL+  +F  +KEAAWAISN T  G  +Q+ +L+ Q  I P C+LL   D ++V V L+GL NILK+ E +             +I++  GLEKIE LQ H+N +IY+ + ++++ ++  D+ +  P
Sbjct:  304 ALRAVGNIVTGTDEQTQVVLNCDALSHFPALLT-HPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDQ-------AETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDP 494          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_XENLA (Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 93/210 (44.29%), Postives = 128/210 (60.95%), Query Frame = 3
Query:    9 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 626
            P  S+L P+LRTVGNIVTG D QTQ  I+   L  L  LL  + K SI+KEA W +SNI AG   QIQ +I   ++ PLV LL+  +F  +KEA WA++N TSGGT EQ+  LV  G ++PL +LL   D + + V L+ + NI     K+GE EK            ++++  GLEKIE+LQTHDN  +Y  ++ L+E Y+  +E + M
Sbjct:  298 PELSILTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLR-HQKPSIQKEAAWALSNIAAGPAPQIQQMITCGLLSPLVDLLKKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK---------LCLLVEELGGLEKIEALQTHDNRMVYHAALALIEKYFSGEEADEM 497          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 87/206 (42.23%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    3 GYPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV-GEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED 617
            G+    V   ALR VGNIVTG D QTQ V++   L  +  LL+ +YK+ I KEA W VSNITAGN++Q+Q V +A I+  ++ LL+  +F  +KEAAWAISN T  G   Q++ +V  G ++P C +L C D +I+ V L+G+ NILK+ GEA + +        T  I++  GL+KIE+LQ H+N +IY+ + ++++ ++  D++
Sbjct:  287 GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLA-HYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNILKMAGEAAEQV--------TSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDE 483          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 91/206 (44.17%), Postives = 125/206 (60.68%), Query Frame = 3
Query:    9 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 614
            P  S++ P+LRTVGNIVTG D QTQ  I+   L  L  LL  + K SI+KEA W +SNI AG   QIQ +I   ++ PLV LL   +F  +KEA WA++N TSGGT EQ+  LV  G ++PL +LL   D + + V L+ + NI     K+GE EK            ++++  GLEKIE+LQTHDN  +Y  ++ L+E Y+  +E
Sbjct:  298 PELSIVTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLR-HQKPSIQKEAAWAISNIAAGPAPQIQQMITCGLLSPLVDLLNKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK---------LCLLVEELGGLEKIEALQTHDNHMVYHAALALIEKYFSGEE 493          
The following BLAST results are available for this feature:
BLAST of CN188947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IMA1_SCHPO9.371e-5652.83Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA2_SCHPO6.285e-5250.98Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA_DROME9.097e-4347.78Importin subunit alpha OS=Drosophila melanogaster ... [more]
IMA2_HUMAN2.647e-4245.02Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]
IMA2_MOUSE3.457e-4245.97Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 ... [more]
IMA4_HUMAN3.822e-4145.00Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 ... [more]
IMA4_MOUSE1.452e-4043.72Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 ... [more]
IMA2_XENLA7.208e-4044.29Importin subunit alpha-2 OS=Xenopus laevis GN=kpna... [more]
IMA3_CAEEL9.414e-4042.23Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA1_XENLA4.672e-3944.17Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188947 ID=CN188947; Name=CN188947; organism=Citrus sinensis; type=EST; length=737bp
GCGGTTACCCTTCTCCTTCAGTGCTTATACCTGCTCTTCGCACAGTTGGC
AATATAGTCACCGGGGATGATATGCAAACTCAGTGCGTTATCGAATATCA
AGCACTGCCGTGCCTTCTTAATCTGTTGTCGGGCAATTATAAAAAGAGCA
TTAAAAAGGAAGCTTGTTGGACTGTCTCGAATATCACCGCTGGCAACAGG
GAGCAAATTCAGGCTGTGATTGAGGCTAACATAATTGGCCCCCTTGTTGC
TCTACTTGAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCATGGGCTA
TCTCAAACGCCACATCTGGTGGTACTCATGAGCAAATAAAATTCCTTGTG
ATTCAAGGGTGCATCAAGCCCTTGTGTGATCTTCTTGTATGTCCCGATCC
AAGAATTGTTACCGTCTGTCTGGAAGGGCTTGAGAACATATTGAAGGTGG
GAGAAGCCGAAAAGAATTTGGGCAACACAGATGTAAATGTCTTTACTCAA
ATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAGTTTACAAACTCA
CGACAATGCTGAGATTTATGAGAAGTCTGTAAAGCTTCTGGAAACATATT
GGTTGGATGACGAGGATGAGACAATGCCACCAGGGGATGCTTCTCAACCT
GGTTTCGGATTTGGAGGCAATGGGAATCCTCCTGCTCCATCTGGTGGCTT
CAATTTCAGCTAGAGGAGTTTTAGCTGCTTTCATGTT
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