CN188947

Overview
NameCN188947
Unique NameCN188947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.102e-39
Identity = 87/199 (43.72%), Postives = 127/199 (63.82%), Query Frame = 3
Query:   33 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMP 629
            ALR VGNIVTG D QTQ V+    L    NLLS + K+ I KEA W +SNITAGN++Q+QAVI+A +I  ++  L   +F  +KEAAWAISN T  G  +Q+++LV Q  I P C+LL   D ++V V L+GL+NIL        +   + +   ++I++  GLEKIE LQ H+N +IY+ + ++++ Y+  D+ +  P
Sbjct:  304 ALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLS-HPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNIL-------IMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDP 494          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.102e-39
Identity = 87/199 (43.72%), Postives = 127/199 (63.82%), Query Frame = 3
Query:   33 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMP 629
            ALR VGNIVTG D QTQ V+    L    NLLS + K+ I KEA W +SNITAGN++Q+QAVI+A +I  ++  L   +F  +KEAAWAISN T  G  +Q+++LV Q  I P C+LL   D ++V V L+GL+NIL        +   + +   ++I++  GLEKIE LQ H+N +IY+ + ++++ Y+  D+ +  P
Sbjct:  304 ALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLS-HPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNIL-------IMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDP 494          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA8_HUMAN (Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.272e-36
Identity = 82/202 (40.59%), Postives = 128/202 (63.37%), Query Frame = 3
Query:   18 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET 623
            +VL P+LRTVGNIVTG D QTQ  I+   L  L  LL  N K SI+KEA W +SN+ AG    IQ ++  +++ PLVALL+N EF ++KEA W ++N  +G T +Q+  LV  G ++PL +LL  PD +IV + L+ +  IL+  E      N        +I++  G+++IE+LQ H+N +I + ++ ++E ++ ++EDE+
Sbjct:  298 NVLTPSLRTVGNIVTGTDEQTQMAIDAGMLNVLPQLLQHN-KPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNGEFKVQKEAVWMVANFATGATMDQLIQLVHSGVLEPLVNLLTAPDVKIVLIILDVISCILQAAEKRSEKEN-----LCLLIEELGGIDRIEALQLHENRQIGQSALNIIEKHFGEEEDES 493          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 85/207 (41.06%), Postives = 124/207 (59.90%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET 623
            YP   V  PALR VGNIVTG+  QTQ VI+   +  +  LL+   KKSI+KE+CW +SNITAG   QI  V+     +  L++LL ++E DIK+EA WA+SN+T+  + + I+ LV    +K   DLL   D  I+ + LEGL NI+K GE  K    T VN +  +I + +G   I  LQ H + ++Y+K+ +L+E +   D  ++
Sbjct:  321 YPDSIVFTPALRAVGNIVTGESSQTQIVIDNNGVELITRLLAVQ-KKSIRKESCWALSNITAGEPSQIDVVVSNPKTVTTLISLLSHSEHDIKREACWALSNSTNNSSTKSIQTLVRHNILKHFIDLLNSQDLVILKIVLEGLINIIKEGEKTKT--KTGVNPYVNLISEMQGESIIYDLQEHQSKDVYKKAFELIEFFESSDYSDS 524          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_CAEEL (Importin subunit alpha-2 OS=Caenorhabditis elegans GN=ima-2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 65/199 (32.66%), Postives = 118/199 (59.30%), Query Frame = 3
Query:   18 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 614
            +++ PALRT+GN+ TG+D  TQ VI+  +L  +L L+      SI KE CW VSNI AG ++QIQAV++AN++  L+ +L++ +   + EA+WA+SN   GGT+ Q+  ++    +  LC  L+  +  ++   LE L  ++      +N     V++    +++  GL+ +E LQ   + +IY ++ +++  ++ DD+
Sbjct:  317 NLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNNTLETLYTLML---TVQNGYPHKVDILHDQVEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDD 512          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2L_HUMAN (Importin subunit alpha-2-like protein OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   30 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 251
            PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITA  ++QIQ V+   ++  LV+
Sbjct:   73 PALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITASRQDQIQQVVNHGLVPFLVS 145          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_CAEEL (Importin subunit alpha-1 OS=Caenorhabditis elegans GN=ima-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 40/190 (21.05%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   45 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 614
            + +I+      T+ +I+   L  L   ++ +Y   + +E C+ +SNI     + I  +I + ++  +  ++E +E+  ++EAA+ I +  +    + ++++V  G +    DLL C D  +V+  L+ +  +L+ GE      N+  N     +++    EK+E L    + +I+ ++  +++ +++DD+
Sbjct:  305 INSIIQATGYFTEEMIDAGLLEVLKGFVNVSY---MSQEVCFIISNICVEGEQTIDKLISSGVLREVARVMEASEYRSRREAAFVICHCCASANQKHLEYVVELGMLSAFTDLLTCMDVSLVSYILDAIYLLLQFGEMRLLPDNS--NPVAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDD 489          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_ORYSJ (Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 53/212 (25.00%), Postives = 101/212 (47.64%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEY------QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH---------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 611
            +LIP LR +GN++  DD     V+        QAL  L+  L  +  + ++KE+ W +SNI AG+ E  + +  +     L+ L+ + +FDI++EAA+ + N     T          E +  +V  G +     L+   D     + L+ LE +++ G   K           ++++  +G+E +E  Q H+N ++   +  L++ Y+ +D
Sbjct:  322 LLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSD-NRVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMR-GYPNKQ--------GPKLVEMEDGIEAMERFQFHENEQMRNMANGLVDEYFGED 523          
The following BLAST results are available for this feature:
BLAST of CN188947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IMA3_MOUSE6.102e-3943.72Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA3_HUMAN6.102e-3943.72Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA8_HUMAN1.272e-3640.59Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 ... [more]
IMA1A_DICDI3.702e-3641.06Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA2_CAEEL2.175e-2832.66Importin subunit alpha-2 OS=Caenorhabditis elegans... [more]
IMA2L_HUMAN6.359e-1252.70Importin subunit alpha-2-like protein OS=Homo sapi... [more]
IMA1_CAEEL1.085e-1121.05Importin subunit alpha-1 OS=Caenorhabditis elegans... [more]
IMA2_ORYSJ1.850e-1125.00Importin subunit alpha-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188947 ID=CN188947; Name=CN188947; organism=Citrus sinensis; type=EST; length=737bp
GCGGTTACCCTTCTCCTTCAGTGCTTATACCTGCTCTTCGCACAGTTGGC
AATATAGTCACCGGGGATGATATGCAAACTCAGTGCGTTATCGAATATCA
AGCACTGCCGTGCCTTCTTAATCTGTTGTCGGGCAATTATAAAAAGAGCA
TTAAAAAGGAAGCTTGTTGGACTGTCTCGAATATCACCGCTGGCAACAGG
GAGCAAATTCAGGCTGTGATTGAGGCTAACATAATTGGCCCCCTTGTTGC
TCTACTTGAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCATGGGCTA
TCTCAAACGCCACATCTGGTGGTACTCATGAGCAAATAAAATTCCTTGTG
ATTCAAGGGTGCATCAAGCCCTTGTGTGATCTTCTTGTATGTCCCGATCC
AAGAATTGTTACCGTCTGTCTGGAAGGGCTTGAGAACATATTGAAGGTGG
GAGAAGCCGAAAAGAATTTGGGCAACACAGATGTAAATGTCTTTACTCAA
ATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAGTTTACAAACTCA
CGACAATGCTGAGATTTATGAGAAGTCTGTAAAGCTTCTGGAAACATATT
GGTTGGATGACGAGGATGAGACAATGCCACCAGGGGATGCTTCTCAACCT
GGTTTCGGATTTGGAGGCAATGGGAATCCTCCTGCTCCATCTGGTGGCTT
CAATTTCAGCTAGAGGAGTTTTAGCTGCTTTCATGTT
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