CN188943

Overview
NameCN188943
Unique NameCN188943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.200e-36
Identity = 84/175 (48.00%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    7 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTS---QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            ++K GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ + +S+  T+ERY+K    A   N +     E+ +   QQE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +LD S+ +IRS + + +   +  +Q +E  L   N+ L
Sbjct:   14 QRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLL 183          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 83/196 (42.35%), Postives = 125/196 (63.78%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQ 603
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+   +++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L  +   +        Q++ G ++N ++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIE 194          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 83/173 (47.98%), Postives = 122/173 (70.52%), Query Frame = 1
Query:    7 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQK-CNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            ++K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+   +S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E  L   N+ L
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYL 183          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 83/174 (47.70%), Postives = 119/174 (68.39%), Query Frame = 1
Query:   10 KKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTS---QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            +K GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ + +S+  T+ERY+K    A   N +     E+ +   QQE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +L+ S+ +IRS + + +   +  +Q +E  L   N+ L
Sbjct:   15 RKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQIL 183          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 1
Query:    7 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            ++K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+   +S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E  L   N+ L
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYL 183          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 86/213 (40.38%), Postives = 129/213 (60.56%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCN-----YGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL-------GQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSA 618
            MGRGR+E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+   +++  T++RY+K +      GAP   V+A++      QQE  KL+ + + LQ + ++L+G+ +  L+ KEL+ LE +L+  + +IR+ + + +   +  +  +E  L   N  L        Q+   +  A  A ++L         Q NP A
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYY----QQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAAAAAQQQQQNPFA 209          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 88/189 (46.56%), Postives = 120/189 (63.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCT-TSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQ 570
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFS+ GKL+E+ + +SSM K +ERYQK         VS     E  +Q    E  ++K   E LQ + R ++GE+L  L   EL  L +QL+ +  ++RS + Q ML  L  L+ KE++L + N  L  R +  + AA  G+Q
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHL-CRLLAEQQAAVEGVQ 179          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF ++SS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L   NK L ++
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 81/172 (47.09%), Postives = 113/172 (65.70%), Query Frame = 1
Query:    7 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            EK   RG++E+KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++FS+RG+LYE+ + +S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E  L   N  L
Sbjct:   40 EKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYL 209          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 84/180 (46.67%), Postives = 115/180 (63.89%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAA 555
            M RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF +  S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L + N+ L  +   L  AA
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAA 178          
The following BLAST results are available for this feature:
BLAST of CN188943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AG_BRANA1.200e-3648.00Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL11_ARATH1.567e-3642.35Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_TOBAC2.046e-3647.98Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_ARATH3.491e-3647.70Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_PETHY5.954e-3647.67Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MAD13_ORYSJ3.859e-3540.38MADS-box transcription factor 13 OS=Oryza sativa s... [more]
GGM13_GNEGN6.583e-3546.56MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL14_ARATH8.598e-3550.00Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD58_ORYSJ1.915e-3447.09MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD56_ORYSJ1.915e-3446.67MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188943 ID=CN188943; Name=CN188943; organism=Citrus sinensis; type=EST; length=710bp
GCGTAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCACTACTTCAAG
CATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAACTAGCCAGCAAGAA
TATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAA
TCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACT
CAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCT
GAGCGAAGCAAATAAGACCCTCGGACAAAGGACGATGACGCTAAGGCACG
CCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCG
ACCTCAGGGCGATAGCTTCATTCACGCCTTGGAATGTGAACCCACATTGC
CAATTGGATA
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