CN188931

Overview
NameCN188931
Unique NameCN188931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9577 contig Csv1_Contig9577:294..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = -3
Query:  432 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSNIPDV 725
            +DV++FGV+ LEIVSG+       DS      DW   LH  G ++  VDPRLG  ++ VEA   + + LLC +  P+ RP+M  V+  L G  ++P++
Sbjct:  547 SDVFAFGVLLLEIVSGRRPT----DSGTFFLADWVMELHARGEILHAVDPRLGFGYDGVEARLALVVGLLCCHQRPTSRPSMRTVLRYLNGDDDVPEI 640          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  453 DVYSFGVVALEIVSGKNNMSYVPD-SNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEG 722
            DV+ FG++ LE+++G   + +    S     L+W   LH+   + ELVD  LG+ ++++E   M+++ALLCT   P+ RP MSEVV MLEG
Sbjct:  480 DVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEG 570          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  453 DVYSFGVVALEIVSGKN--NMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEG 722
            DV+ +G++ LE+++G+   +++ + + +    LDW   L +   L  LVDP L S + + E E++I++ALLCT +SP  RP MSEVV MLEG
Sbjct:  490 DVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 581          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK21_ARATH (Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  447 ADVYSFGVVALEIVSGKNNMSYVP-DSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS 725
            +DVYSFGV+ LEI+ GK N S+   D + +  +   + L  +G+L+ELVDP +G  ++K E  R I I LLC   +P  RP+MS +  ML   S
Sbjct:  546 SDVYSFGVLILEIIGGKKNSSFHQIDGSVSNLVTHVWRLRNNGSLLELVDPAIGENYDKDEVIRCIHIGLLCVQENPDDRPSMSTIFRMLTNVS 639          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  438 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPL-DWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS---NIP 725
            +DVYSFGV+ LEIVSG+ N S+       C L  + + L  + + +ELVDP +   + K E  R I I LLC   +P  RP +S +  ML  SS   N+P
Sbjct:  532 SDVYSFGVLILEIVSGRKNSSFYQMDGSVCNLVTYVWRLWNTDSSLELVDPAISGSYEKDEVTRCIHIGLLCVQENPVNRPALSTIFQMLTNSSITLNVP 631          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  420 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCP---LDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS------NIPDVIPEA 725
            +DVYSFG++ LEI+SGK N S   +   T     + +A+ L R+G+ ++L+D  +G  +   E  R I IALLC   +P  RP +S +VSML  ++       IP   P++
Sbjct:  536 SDVYSFGILILEIISGKKNSSLYQNDETTTAGNLVTYAWRLWRNGSQLKLLDSSIGRNYQSNEVTRCIHIALLCVQENPEDRPKLSTIVSMLTSNTISVPAPGIPGFFPQS 646          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  459 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKV-----EAERMIKIALLCTNASPSLRPTMSEVVSML 725
            ADVYSFGV+ LEI  G    ++VP++       W  +L+    L+E +DP L  EF +V     EA +++++ LLCT ASPSLRP+M EV+ ML
Sbjct:  497 ADVYSFGVLVLEIACGTRINAFVPETGHLLQRVW--NLYTLNRLVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQASPSLRPSMEEVIRML 588          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  411 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSNIPDVIPEAGGL 725
            +DVYSFGV+ LEI+SGK N S+         + +A+ L  +G  +ELVDP +     + E  R + I LLC    P+ RPT+S +V ML  S+ +   +P   GL
Sbjct:  520 SDVYSFGVLVLEIISGKKNSSFYQTDGAHDLVSYAWGLWSNGRPLELVDPAIVENCQRNEVVRCVHIGLLCVQEDPAERPTLSTIVLMLT-SNTVTLPVPRQPGL 623          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK24_ARATH (Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = -3
Query:  390 ADVYSFGVVALEIVSGKNNMSY-VPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSNIPDVIPEAGGLSEDLRFK 725
            +DVYSFGV+ LEI+ GK N S    D + +  + + + L  +  L+ELVD  +G  +++ E  R I I LLC   +P+ RPTMS V  ML  +S I   +P+  G    +RFK
Sbjct:  495 SDVYSFGVLILEIIGGKKNSSINETDGSISNLVTYVWRLWNNEPLLELVDAPMGENYDRNEVIRCIHIGLLCVQENPADRPTMSTVFHMLTNTS-ITLHVPQPPGFVFRVRFK 606          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  447 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS 725
            +DVYSFGV+ LEI+SG+ N S++   +    +  A+ L R+GT ++LVDP +     K E  R   I LLC    P  RP MS +  ML  ++
Sbjct:  519 SDVYSFGVLVLEIISGRKNNSFIETDDAQDLVTHAWRLWRNGTALDLVDPFIADSCRKSEVVRCTHIGLLCVQEDPVKRPAMSTISVMLTSNT 611          
The following BLAST results are available for this feature:
BLAST of CN188931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
LRKA2_ARATH1.467e-1338.78Lectin-domain containing receptor kinase A4.2 OS=A... [more]
Y2239_ARATH3.269e-1340.66Probable LRR receptor-like serine/threonine-protei... [more]
SERK2_ARATH4.269e-1341.30Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
CRK21_ARATH4.269e-1342.55Cysteine-rich receptor-like protein kinase 21 OS=A... [more]
CRK30_ARATH9.511e-1341.00Putative cysteine-rich receptor-like protein kinas... [more]
CRK22_ARATH9.511e-1336.94Cysteine-rich receptor-like protein kinase 22 OS=A... [more]
CRK42_ARATH1.242e-1244.68Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
CRK10_ARATH1.242e-1239.05Cysteine-rich receptor-like protein kinase 10 OS=A... [more]
CRK24_ARATH1.622e-1239.82Cysteine-rich receptor-like protein kinase 24 OS=A... [more]
CRK7_ARATH2.767e-1239.78Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188931 ID=CN188931; Name=CN188931; organism=Citrus sinensis; type=EST; length=727bp
GACGGAAAATTTTAGATACAAAGATGATGCGAGAAGGTATGACACATAGA
CGTAGGTTACAAAAAAGTTGAATGTTGAAACTTGAAACTAGCTTGCGGAT
GATTTTGCACATCCGCTGGACTCAAATTGTGTTGTGAAGATCATGGGCAG
ATTGTGAAGAACCAGTCCATGAGGGGACTGGTGTTGATAATTGGGCAACC
GATCTTTGTCTTTCCATATGAATATGACTGTCTCTCATGGCCTTAAACTT
CAAATATGCCTCTGCATTAATTTCACGGACATCATCGGTAGAGGAAGAAC
CAGGCAAGAAGCTGGCTGACGATGAATAATGAGACAGACTTCCTTCCAAA
CCCGAACTATTCATTTCGGCGTGGATGGTCTCTTAGAGTTTTAAACCTCA
AGTCTTCACTCAAACCACCGGCTTCAGGGATTACATCCGGAATGTTAGAA
GATCCTTCCAGCATGCTTACCACTTCAGACATGGTTGGCCTTAGTGAAGG
TGACGCATTGGTGCATAAGAGTGCTATTTTAATCATTCTCTCTGCTTCAA
CCTTGTTGAATTCTGATCCGAGCCTTGGATCCACTAACTCCATTAACGTA
CCACTTCGGTGTAAATGGAAGGCCCAGTCAAGAGGACAGGTGCAATTACT
GTCTGGCACATAACTCATATTATTCTTCCCACTGACGATTTCCAAAGCCA
CAACTCCGAAACTGTAAACATCTGCTT
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