CN188931

Overview
NameCN188931
Unique NameCN188931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = -3
Query:  450 DVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGS 722
            D YSFGV+ LEI SG  N  +  D++    +   +    S  + E++D  +G + +K E +R+++I LLCT  SP LRPTMS+V+ M+  +
Sbjct:  518 DAYSFGVLVLEITSGFRNNKFRSDNSLETLVTQVWKCFASNKMEEMIDKDMGEDTDKQEMKRVMQIGLLCTQESPQLRPTMSKVIQMVSST 608          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  426 ADVYSFGVVALEIVSGKNNMS-YVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS-NIPDVIP 725
            +DVYSFGV+ LEI+SGK N S Y  D      + + + L  + +L EL+DP +  +F   E  R I I LLC   +P+ RPTMS +  ML  SS  +P  +P
Sbjct:  522 SDVYSFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKSLHELLDPFINQDFTSEEVIRYIHIGLLCVQENPADRPTMSTIHQMLTNSSITLPVPLP 623          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  453 DVYSFGVVALEIVSGKN--NMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEG 722
            DV+ +G++ LE+V+G+   + S + + +    LD    L R   L  +VD  L  E+ K E E MI++ALLCT  SP  RP MSEVV MLEG
Sbjct:  475 DVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEG 566          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  453 DVYSFGVVALEIVSGKN--NMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEG 722
            DV+ +G++ LE+++G+   +++ + + +    LDW   L +   L  LVDP L + + + E E++I++ALLCT  SP  RP MSEVV MLEG
Sbjct:  487 DVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEG 578          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = -3
Query:  432 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSNIPDV 725
            +DV++FGV+ LEIVSG+       DS      DW   L  SG ++  +DPRLGS +++ EA   + + LLC +  P  RP M  V+  L    ++P++
Sbjct:  548 SDVFAFGVLLLEIVSGRKPT----DSGTFFIADWVMELQASGEILSAIDPRLGSGYDEGEARLALAVGLLCCHHKPESRPLMRMVLRYLNRDEDVPEI 641          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  444 ADVYSFGVVALEIVSGKNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSN 725
            ADVY+FGV+ +EIV+GK N ++   ++      W     ++ TL   +DPRL   F + EA ++++I LLC  +S  LRP+MSE+V ML+   +
Sbjct:  500 ADVYAFGVLIIEIVTGKKNNAFTQGTSSVLYSVWEHF--KANTLDRSIDPRLKGSFVEEEALKVLQIGLLCVQSSVELRPSMSEIVFMLQNKDS 591          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK19_ARATH (Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  450 ADVYSFGVVALEIVSG-KNNMSYVPDSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGS 725
            +DVYSFGV+ LEI+SG KN+  Y  D +    + + + L  +G+  ELVDP  G  +   E  R I IALLC       RPTMS +V ML  S
Sbjct:  509 SDVYSFGVLVLEIISGMKNSSLYQMDESVGNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDAEDRPTMSSIVQMLTTS 601          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  447 ADVYSFGVVALEIVSGKNNMSYVP-DSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSS 725
            +DVYSFGV+ LEIVSG  N S    D + +  + + + L  +G+  ELVDP  G  +   E  R I IALLC     + RPTMS +V ML  SS
Sbjct:  527 SDVYSFGVLVLEIVSGMKNSSLDQMDGSISNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDANDRPTMSAIVQMLTTSS 620          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK16_ARATH (Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  459 ADVYSFGVVALEIVSGKNNMSYVP-DSNCTCPLDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSML 725
            +DVYSFGV+ LEI+ GK + S+   D +    + + + L  + + +ELVDP +G  ++K E  R I I+LLC   +P+ RPTMS V  ML
Sbjct:  518 SDVYSFGVLILEIIVGKKSSSFHEIDGSVGNLVTYVWRLWNNESFLELVDPAMGESYDKDEVIRCIHISLLCVQENPADRPTMSTVFQML 607          
BLAST of CN188931 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = -3
Query:  414 ADVYSFGVVALEIVSGKNNMS-YVPDSNCTCP--LDWAFHLHRSGTLMELVDPRLGSEFNKVEAERMIKIALLCTNASPSLRPTMSEVVSMLEGSSNIPDVIPEAGG 725
            +D+YSFGV+ LEI+SGK N   Y  D   T    + +A  L R+ + +ELVDP  G  +   E  R I IALLC   +P  RP +S ++ ML  S+ I   +P   G
Sbjct:  533 SDIYSFGVLVLEIISGKKNSGVYQMDETSTAGNLVTYASRLWRNKSPLELVDPTFGRNYQSNEVTRCIHIALLCVQENPEDRPMLSTIILMLT-SNTITLPVPRLPG 638          
The following BLAST results are available for this feature:
BLAST of CN188931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CRK43_ARATH2.767e-1238.46Putative cysteine-rich receptor-like protein kinas... [more]
CRK18_ARATH3.614e-1242.16Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
Y5129_ARATH4.720e-1243.48Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH4.720e-1240.22Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
LRKA3_ARATH4.720e-1236.73Lectin-domain containing receptor kinase A4.3 OS=A... [more]
CRK1_ARATH4.720e-1239.36Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
CRK19_ARATH4.720e-1244.09Cysteine-rich receptor-like protein kinase 19 OS=A... [more]
CRK20_ARATH6.165e-1244.68Putative cysteine-rich receptor-like protein kinas... [more]
CRK16_ARATH1.373e-1142.22Putative cysteine-rich receptor-like protein kinas... [more]
CRK11_ARATH1.373e-1140.19Cysteine-rich receptor-like protein kinase 11 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188931 ID=CN188931; Name=CN188931; organism=Citrus sinensis; type=EST; length=727bp
GACGGAAAATTTTAGATACAAAGATGATGCGAGAAGGTATGACACATAGA
CGTAGGTTACAAAAAAGTTGAATGTTGAAACTTGAAACTAGCTTGCGGAT
GATTTTGCACATCCGCTGGACTCAAATTGTGTTGTGAAGATCATGGGCAG
ATTGTGAAGAACCAGTCCATGAGGGGACTGGTGTTGATAATTGGGCAACC
GATCTTTGTCTTTCCATATGAATATGACTGTCTCTCATGGCCTTAAACTT
CAAATATGCCTCTGCATTAATTTCACGGACATCATCGGTAGAGGAAGAAC
CAGGCAAGAAGCTGGCTGACGATGAATAATGAGACAGACTTCCTTCCAAA
CCCGAACTATTCATTTCGGCGTGGATGGTCTCTTAGAGTTTTAAACCTCA
AGTCTTCACTCAAACCACCGGCTTCAGGGATTACATCCGGAATGTTAGAA
GATCCTTCCAGCATGCTTACCACTTCAGACATGGTTGGCCTTAGTGAAGG
TGACGCATTGGTGCATAAGAGTGCTATTTTAATCATTCTCTCTGCTTCAA
CCTTGTTGAATTCTGATCCGAGCCTTGGATCCACTAACTCCATTAACGTA
CCACTTCGGTGTAAATGGAAGGCCCAGTCAAGAGGACAGGTGCAATTACT
GTCTGGCACATAACTCATATTATTCTTCCCACTGACGATTTCCAAAGCCA
CAACTCCGAAACTGTAAACATCTGCTT
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