CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 89/171 (52.05%), Postives = 121/171 (70.76%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKR-SFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKE 600
            +K H+N++V GH+D+GKSTT G  +  LG +D+R I +  +E+ +  K  +FKYAWV+D +K ERERGITID+A  KFET +Y+  +IDAPGHRDFIKNMITG S+ADCA+L+  +  G  +  I+  GQ REHA L  TLGV Q+I   NKMD +  KYS+  Y + V++
Sbjct:    7 DKPHLNMIVTGHIDNGKSTTMGHFLMDLGVVDERTIAQHAEESEKTGKGDTFKYAWVMDNIKDERERGITIDLAFQKFETPKYFFTLIDAPGHRDFIKNMITGASEADCAILVLSAKEGETDTAIAAGGQAREHAFLLKTLGVNQLIVAVNKMDDS--KYSEEAYKKTVEK 175          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 91/178 (51.12%), Postives = 117/178 (65.73%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M KEK HIN+  IGHVD GKST  G+L+Y+ G I + +I+++ KEA E  K +F++AWV+D+LK ERERG+TID+A  KF+T +YY  ++D PGHRDFIKNMITG SQAD AVL+ D              QTREH  LA TLG+ Q+I   NKMD     Y +  Y+   + VS  L
Sbjct:    1 MAKEKEHINVAFIGHVDHGKSTLIGRLLYETGEIPEHIIEKMRKEAQEKGKATFEFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPGHRDFIKNMITGASQADAAVLVMDVVE-------KVQPQTREHIFLARTLGINQIIVAINKMDRV--NYDQKEYEAAKEAVSKLL 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M  +K H+N+ VIGH+D GKSTT G+L+++ G +   +I+   KEA    K SF++AWV+D LK ERERGITIDIA  +F+T ++Y  V+D PGHRDF+KNMITG SQAD A+L+  +  G  E       QT+EH  LA TLG+ Q++   NKMDA    Y + R++E+ KE++  +
Sbjct:    1 MANDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEERERGITIDIAHKRFDTAKFYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQLVIAINKMDAV--NYDQKRFEEVKKELTQLI 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 87/178 (48.88%), Postives = 121/178 (67.98%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M  +K H+N+ VIGH+D GKSTT G+++++ G +   +I+   KEA    K +F++AWV+D LK ERERGITIDIA  +F+T +YY  V+D PGHRDF+KNMITG SQAD A+L+  +  G  E       QT+EH  LA TLG+ Q+I   NKMDA   K+ + R++E+ KE+S  +
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTTVGRMMFETGAVPAHIIEAYRKEAESKGKATFEFAWVMDNLKEERERGITIDIAHKRFDTPKYYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQIIIAINKMDAV--KFDEKRFNEVKKELSDLI 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45
Identity = 96/178 (53.93%), Postives = 122/178 (68.54%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M K+K H+NIV IGHVD GKSTT G+L+Y  G I +++I++ E E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y  +IDAPGHRDF+KNMITG SQAD AVL+  +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   L
Sbjct:    1 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMV--NYNQKRFEEVKAQVEKLL 167          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +N+VVIGHVD+GKST  G ++Y LG I+KR + + E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT     ++DAPGH+DFI NMITG +QAD AVL+ D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +L
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFL 429          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +N+VVIGHVD+GKST  G ++Y LG I+KR + + E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT     ++DAPGH+DFI NMITG +QAD AVL+ D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +L
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFL 429          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 88/178 (49.44%), Postives = 120/178 (67.42%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M   K HIN+ VIGH+D GKST  G+L+++ G +   +I++ +KEA    K +F++AWV+D LK ERERGITIDIA  +F+T +YY  V+D PGHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L
Sbjct:    1 MAATKPHINLAVIGHIDHGKSTLVGRLLFETGAVPAHIIEQYKKEAESKGKGTFEFAWVMDSLKEERERGITIDIAHRRFDTEKYYFTVVDCPGHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAI--NYDQKRYNEVKEEVSKIL 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 87/174 (50.00%), Postives = 119/174 (68.39%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +N+VVIGHVD+GKST  G ++Y LG ++KR + + E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT     ++DAPGH+DFI NMITG +QAD AVL+ D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +L
Sbjct:  253 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFL 424          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 87/174 (50.00%), Postives = 119/174 (68.39%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +N+VVIGHVD+GKST  G ++Y LG ++KR + + E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT     ++DAPGH+DFI NMITG +QAD AVL+ D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +L
Sbjct:  256 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFL 427          
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_CENSY3.123e-4552.05Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_ARCFU4.079e-4551.12Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METPE6.958e-4548.31Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METB66.958e-4548.88Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_PYRFU9.088e-4553.93Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
HBS1L_PONAB1.187e-4450.57HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_HUMAN1.187e-4450.57HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
EF1A_UNCMA1.187e-4449.44Elongation factor 1-alpha OS=Uncultured methanogen... [more]
HBS1L_RAT1.550e-4450.00HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE1.550e-4450.00HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
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