CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 97/178 (54.49%), Postives = 121/178 (67.98%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M KEK H+NIV IGHVD GKSTT G+L++    I +++I++ E E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y  +IDAPGHRDF+KNMITG SQAD AVLI  +T G          QT+EHA LA TLG+  +I   NKMDA   KY + R+ E+  +V+  L
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLIVAATDGVMP-------QTKEHAFLARTLGINHIIVGVNKMDAV--KYDEKRFKEVATQVTKLL 167          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 95/178 (53.37%), Postives = 122/178 (68.54%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M K+K H+NIV IGHVD GKSTT G+L+Y  G I +++I++ E E  E  K SFK+AWV+D+L+ ERERGITID+A  KFET   Y  +IDAPGHRDF+KNMITG SQAD AVL+  +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   L
Sbjct:    3 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMV--NYNQKRFEEVKAQVEKLL 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.644e-44
Identity = 82/175 (46.86%), Postives = 116/175 (66.29%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K HIN+ V+GHVD+GKST  G+L+Y+ G +D++  + +E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + +  +ID PGHRDF+KNMI G SQAD A+ +  +  G FE  I   GQ REH  L  TLG++Q++   NKMDA    Y + RY+++  EVS  L
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDAV--NYDQKRYEQVKAEVSKLL 186          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.453e-44
Identity = 82/175 (46.86%), Postives = 117/175 (66.86%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K HIN+ V+GHVD+GKST  G+L+Y+ G +D++ ++ +E+ A ++ K  F +AW+LD+ K ERERG+TI+     FET + +  +ID PGHRDF+KNMI G SQAD A+ +  +  G FEA I   GQ REH  L  TLGV+Q++   NKMD     Y + RY+++  EVS  L
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKALKEIEEMAKKIGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFEAAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDVV--NYDQKRYEQVKAEVSKLL 186          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.510e-44
Identity = 90/178 (50.56%), Postives = 122/178 (68.54%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M K+K  +N+  IGHVD+GKSTT G+L+Y  G ID ++++++++EA E  K  F++A+V+D LK ERERG+TID+A  KFET +Y   ++D PGHRDFIKNMITG SQAD AVL+ D      +A      QTREH  LA TLG+KQ+    NKMD  T  YS+  Y+++ K +S  L
Sbjct:    1 MAKQKPVLNVAFIGHVDAGKSTTVGRLLYDSGAIDPQLLEKLKREAQERGKAGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVDVN----DAKTGIQPQTREHMFLARTLGIKQIAVAINKMD--TVNYSQEEYEKMKKMLSEQL 172          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.890e-44
Identity = 87/174 (50.00%), Postives = 118/174 (67.82%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +N+VVIGHVD+GKST  G L+Y LG ++KR + + E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFET      ++DAPGH+DFI NMITG +QAD AVL+ D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +L
Sbjct:  260 KQLLNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFL 431          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.890e-44
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K H+N+ VIGHVD+GKST  G+L+Y+ G +D++  + +E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + +  +ID PGHRDFIKNMI G SQAD A+ +  +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  L
Sbjct:   14 QKPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIV--NYDQKRYEQIKAEVSKLL 186          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.005e-43
Identity = 81/175 (46.29%), Postives = 115/175 (65.71%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K HIN+ V+GHVD+GKST  G+L+Y+ G +D++  + +E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + +  +ID PGHRDF+KNMI G SQAD A+ +  +  G FE  I   GQ REH  L  TLG++Q++   NKMD     Y + RY+++  EVS  L
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKGFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDVV--NYDQKRYEQVKSEVSKLL 186          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.923e-43
Identity = 95/178 (53.37%), Postives = 119/178 (66.85%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M KEK H+NIV IGHVD GKSTT G+L+Y  G I + +I++ E E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y  +IDAPGHRDF+KNMITG SQAD AVL+  +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   L
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMV--NYDQKVFEKVKAQVEKLL 167          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.923e-43
Identity = 95/178 (53.37%), Postives = 119/178 (66.85%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M KEK H+NIV IGHVD GKSTT G+L+Y  G I + +I++ E E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y  +IDAPGHRDF+KNMITG SQAD AVL+  +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   L
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMV--NYDQKVFEKVKAQVEKLL 167          
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_THESM2.025e-4454.49Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_PYRWO2.025e-4453.37Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRCJ2.644e-4446.86Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAE3.453e-4446.86Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METJA4.510e-4450.56Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
HBS1L_BOVIN5.890e-4450.00HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_PYRIL5.890e-4448.00Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRAR1.005e-4346.29Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRHO2.923e-4353.37Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB2.923e-4353.37Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
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