CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.358e-40
Identity = 78/174 (44.83%), Postives = 113/174 (64.94%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K H++++ +GHVD+GKST  G L+Y  G +DKR I++ E+EA +  ++ +  +WV+D  K ER  G TI++    FET +    ++DAPGH+ ++  MI G SQAD  VL+  +  G +E G  + GQTREHALLA T GV +M+   NKMD  T  +SK RYD+ V  VS++L
Sbjct:  258 KDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTREHALLAKTQGVNKMVVVVNKMDDPTVNWSKERYDQCVSNVSNFL 431          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 83/178 (46.63%), Postives = 115/178 (64.61%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M ++K H N+ VIGHVD GKST  G+L+++ G + + VI++  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY  ++D PGHRDF+KNMITG SQAD AVL+  +  G          QT+EH  LA TLG+ ++I   NKMD     Y + +Y  +V EV+  L
Sbjct:    1 MSEDKPHQNLAVIGHVDHGKSTMVGRLLFETGSVPEHVIEQYREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTDEYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIDELIIAVNKMDLV--DYDENKYKAVVDEVNQLL 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.501e-39
Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K H++I+ +GHVD+GKST  G L+Y  G +DKR +++ E+EA E  ++ +  +WV+D  K ER  G TI++    FET +    ++DAPGH+ ++  MI G SQAD  +L+  +  G +E G  K GQTREHALLA T GV +MI   NKMD  T  + K RYD  V  ++++L
Sbjct:  272 KDHVSIIFMGHVDAGKSTMGGNLLYLTGSVDKRTVEKYEREAKEAGRQGWYLSWVMDTNKEERNDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADIGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKMIVVINKMDDPTVGWDKERYDHCVGNLTNFL 445          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.561e-39
Identity = 84/178 (47.19%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M +EK HIN+V IGHVD GKSTT G+L Y LG I +  ++++ +EA +  K  F +A+++D+ K ER RG+TIDIA  + ET   Y  ++DAPGH+DF+KNMITG SQAD AVL+  +  G  E       QT+EHA+LA T G+ Q+I   NKMD     Y + R++E+  +V   L
Sbjct:    1 MPREKPHINVVFIGHVDHGKSTTVGRLKYDLGLIPESELEKIREEAKKYGKEEFVFAYLMDRQKEERARGVTIDIAHTELETPHNYITIVDAPGHKDFVKNMITGASQADAAVLVVAADDGVQE-------QTQEHAVLARTFGINQIIVYINKMDKV--NYDQKRFEEVKNQVLKLL 169          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 160.999 bits (406), Expect = 4.368e-39
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K  +++VV GHVDSGKST  G+++++LG I+ R +Q++  EAA   K SF YAW+LD  + ER RG+T+D+A   FE+ +    + DAPGHRDFI  MI G S AD AVL+ DS+   FE G  ++GQTREHA L   LG+ +++   NK+D  +  +S+ R+ EI   VS +L
Sbjct:  175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFL 346          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.732e-39
Identity = 74/174 (42.53%), Postives = 112/174 (64.37%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K H++I+ +GHVD+GKST  G ++Y  G +DKR +++ E+EA +  ++ +  +WV+D  K ER  G TI++    FET +    ++DAPGH+ ++  MI G SQAD  +L+  +  G +E G  K GQTREHALLA T GV ++I   NKMD +T  +SK RY E   ++ ++L
Sbjct:  290 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDSTVGWSKERYQECTTKLGAFL 463          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.732e-39
Identity = 82/175 (46.86%), Postives = 113/175 (64.57%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K H N+ +IGHVD GKST  G+L+++ G + + VI++  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY  ++D PGHRDF+KNMITG SQAD AVL+  +  G          QTREH  LA TLG+ ++I   NKMD     YS+  Y+++  EV   L
Sbjct:    3 DKPHQNLAIIGHVDHGKSTLVGRLLFETGSVPEHVIEQHREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTEDYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLARTLGINELIIGVNKMDIV--DYSEETYEDVKTEVDKLL 168          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 74/174 (42.53%), Postives = 113/174 (64.94%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K H++I+ +GHVD+GKST  G L++  G +DKR +++ E+EA +  ++ +  +W++D  K ER  G TI++    FET +    ++DAPGH+ +I  MI G SQAD  VL+  S  G +EAG  + GQ+REHA+LA T GV +++   NKMD  T  +SK RY+E   +++ YL
Sbjct:  316 KDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGWYLSWIMDTNKEERNDGKTIEVGKSYFETDKRRYTILDAPGHKLYISEMIGGASQADVGVLVISSRKGEYEAGFERGGQSREHAILAKTQGVNKLVVVINKMDDPTVNWSKERYEECTTKLAMYL 489          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.168e-38
Identity = 74/174 (42.53%), Postives = 110/174 (63.22%), Query Frame = 1
Query:   94 KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            K H++I+ +GHVD+GKST  G ++Y  G +DKR +++ E+EA +  ++ +  +WV+D  K ER  G TI++    FET +    ++DAPGH+ ++  MI G SQAD  +L+  +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +SK RY E   ++  +L
Sbjct:  287 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVNWSKERYQECTTKLGVFL 460          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.308e-38
Identity = 80/175 (45.71%), Postives = 113/175 (64.57%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            ++ H N+ +IGHVD GKST  G+L+Y+ G + + VI++ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T  Y   ++D PGHRDF+KNMITG SQAD AVL+  +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L
Sbjct:    3 DEQHQNLAIIGHVDHGKSTLVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLV--DYGESEYKQVVEEVKDLL 168          
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3_YEAST1.358e-4044.83Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_NATPD6.740e-4046.63Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
ERF3_KLULA1.501e-3944.25Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_NANEQ2.561e-3947.19Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
HBS1_SCHPO4.368e-3946.55Elongation factor 1 alpha-like protein OS=Schizosa... [more]
ERF3_CANAL9.732e-3942.53Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_HALWD9.732e-3946.86Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
ERF3_PICPI1.271e-3842.53Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA2.168e-3842.53Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_HALMA6.308e-3845.71Elongation factor 1-alpha OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
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