CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 4.624e-73
Identity = 135/178 (75.84%), Postives = 152/178 (85.39%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGK+K H+N+VVIGHVDSGKSTT G LIYK GGIDKR I++ EKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET RY   VIDAPGHRDFIKNMITGTSQADCA+LI  +  G FEAGISKDGQTREHALLAFTLGV+Q+I  CNKMD  T K+S+ R++EIVKE + ++
Sbjct:    1 MGKDKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQELGKSSFKYAWVLDKLKAERERGITIDIALWKFETPRYQVTVIDAPGHRDFIKNMITGTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVACNKMD--TCKWSEDRFNEIVKETNGFI 176          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 6.039e-73
Identity = 136/178 (76.40%), Postives = 152/178 (85.39%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK H+N+VVIGHVDSGKSTT G LIYK GGIDKR I++ EKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWK ET +Y   VIDAPGHRDFIKNMITGTSQADCA+LI    TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD  T  +S+AR++EIVKE S+++
Sbjct:    1 MGKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--TTNWSEARFNEIVKETSNFI 176          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 7.888e-73
Identity = 135/178 (75.84%), Postives = 152/178 (85.39%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK+HIN+VVIGHVDSGKSTT G LIYK GGIDKR I++ EKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y   VIDAPGHRDFIKNMITGTSQADCA+LI     G FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+   K+ ++R+ EIVKE S+++
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFI 176          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.030e-72
Identity = 137/179 (76.54%), Postives = 155/179 (86.59%), Query Frame = 1
Query:   82 MGKE-KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKE KTHIN+VVIGHVDSGKSTT G LIYK GGID R I++ EKEA E+ K+SFKYAWVLDKLKAERERGITIDIALWKFET +Y+  VIDAPGHRDFIKNMITGTSQADCA+LI  + TG FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+    +S+ R++EIVKEVS+++
Sbjct:    1 MGKEEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDNRTIEKFEKEAEELGKKSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDST--NWSEPRFNEIVKEVSNFI 177          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 1.345e-72
Identity = 134/178 (75.28%), Postives = 152/178 (85.39%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEKTH+N+VVIGHVD+GKSTT G LIYK GGIDKR I++ EKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKF+T +YY  VIDAPGHRDFIKNMITGTSQADCA+LI     G FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+   K+S+ RY+EI KE ++++
Sbjct:    1 MGKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEADELGKGSFKYAWVLDKLKAERERGITIDIALWKFQTPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDSV--KWSQDRYNEICKETANFV 176          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.345e-72
Identity = 134/175 (76.57%), Postives = 148/175 (84.57%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +K HIN+VVIGHVDSGKSTT G LIYK GGIDKRVI++ EKE+AE  K SFKYAWVLDKLKAERERGITIDI+LWKFET +Y+  +IDAPGHRDFIKNMITGTSQAD A+L+  S  G FEAGISKDGQTREHALLAFTLGVKQMI C NKMD  T  +S+ RY EI KE+S YL
Sbjct:    5 DKVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAWVLDKLKAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASPQGEFEAGISKDGQTREHALLAFTLGVKQMIVCLNKMDEKTVNFSEERYQEIKKELSDYL 179          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.345e-72
Identity = 136/179 (75.98%), Postives = 156/179 (87.15%), Query Frame = 1
Query:   82 MGKE-KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKE KTHIN+VVIGHVDSGKSTT G LIYK GGID R I++ EKEA E+ K+SFKYAWVLDKLK+ERERGITIDIALWKFET +Y   VIDAPGHRDFIKNMITGTSQADCA+LI  + TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD  T K+S++R++EI+KEVS+++
Sbjct:    1 MGKEDKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDSRTIEKFEKEAEELGKKSFKYAWVLDKLKSERERGITIDIALWKFETPKYSVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMD--TTKWSESRFNEIIKEVSNFI 177          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.757e-72
Identity = 134/178 (75.28%), Postives = 149/178 (83.71%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK H++IVVIGHVDSGKSTT G LIYK GGIDKR I++ EKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET +Y   +IDAPGHRDFIKNMITGTSQAD A+L+  S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +SK RY+E+ KE+  YL
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSKERYEEVSKEMDLYL 178          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.915e-72
Identity = 138/179 (77.09%), Postives = 155/179 (86.59%), Query Frame = 1
Query:   82 MGKE-KTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKE K HINIVVIGHVDSGKSTT G LIYK GGID+R I++ EKEAAE+ K SFKYAWVLDKLK+ERERGITIDIALWKF+T++Y   VIDAPGHRDFIKNMITGTSQADCA+LI  S TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD  T K+S+ RY+EIVKE S+++
Sbjct:    1 MGKEDKQHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFQTSKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFEAGISKDGQTREHALLAFTLGVRQLIVALNKMD--TCKWSQDRYNEIVKETSNFI 177          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.943e-71
Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK H++IVVIGHVDSGKSTT G LIYK GGI+KR I++ EKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET +Y   +IDAPGHRDFIKNMITGTSQAD A+L+  S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +S+ RY+E+ KE+  YL
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIEKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETEKYSFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSQDRYEEVSKEMDLYL 178          
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_CRYNE4.624e-7375.84Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_PIRIN6.039e-7376.40Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_YEAST7.888e-7375.84Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_COCIM1.030e-7276.54Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_YARLI1.345e-7275.28Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_TETPY1.345e-7276.57Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_AJECG1.345e-7275.98Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1AC_PORPU1.757e-7275.28Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_ASPOR3.915e-7277.09Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_PORYE1.943e-7174.16Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
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