CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9469 contig Csv1_Contig9469:14..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.818e-69
Identity = 129/164 (78.66%), Postives = 142/164 (86.59%), Query Frame = 1
Query:  124 HVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            HVDSGKSTT G LIYK GGIDKR I++ EKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET +YY  +IDAPGHRDFIKNMITGTSQADCAVLI  + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+  P YS++R++EI KEVSSY+
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 164          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 9.025e-69
Identity = 130/178 (73.03%), Postives = 145/178 (81.46%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M KEK H+N+VVIGHVDSGKST+ G LIYK GGIDKR I++ EKEAAEM K SFKYAWVLDKLKAERERGITIDIALW FET +    +IDAPGHRDFIKNMITGTSQAD A+LI  S  G FEAGISK+GQTREHALLAFT+GVKQMI   NKMD  +  + + R+ EI KE+S YL
Sbjct:    1 MPKEKNHLNLVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWNFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASGQGEFEAGISKEGQTREHALLAFTMGVKQMIVAVNKMDDKSVNWDQGRFIEIKKELSDYL 178          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.429e-68
Identity = 131/178 (73.60%), Postives = 148/178 (83.15%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEKTHIN+VVIGHVDSGKSTT G LIYKLGGIDKR I++ EKE++EM K SFKYAWVLDKLKAERERGITIDIALW+FET +Y+  VIDAPGHRDFIKNMITGTSQAD A+L+  +    FE   SK+GQTREHALLAFTLGV+QMI   NKMD  T +Y ++R+DEI  EV  YL
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERERGITIDIALWQFETPKYHYTVIDAPGHRDFIKNMITGTSQADVALLVVPADR--FEGAFSKEGQTREHALLAFTLGVRQMIVGINKMD--TCEYKQSRFDEIFNEVDGYL 174          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.479e-68
Identity = 119/175 (68.00%), Postives = 145/175 (82.86%), Query Frame = 1
Query:   91 EKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            +KTH+NIV+IGHVDSGKSTT G LIYK GG D R +++VE  AA++ K SFK+AW+LDKLKAERERGITIDI+LWKF+T R+   +IDAPGHRDFIKNMITGTSQAD A+L+  + TG FEAG+S++GQTREHALLA+T+GVKQ+I C NKMD   P YS  R+DE+V+ V  YL
Sbjct:    7 QKTHLNIVIIGHVDSGKSTTTGHLIYKCGGFDPRALEKVEAAAAQLGKSSFKFAWILDKLKAERERGITIDISLWKFQTNRFTITIIDAPGHRDFIKNMITGTSQADVALLVVSAATGEFEAGVSRNGQTREHALLAYTMGVKQLIVCVNKMDLTDPPYSHKRFDEVVRNVMVYL 181          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.458e-66
Identity = 125/178 (70.22%), Postives = 143/178 (80.34%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HIN+VVIGHV +GKSTT G LIY  GGIDKR I+R E+    + K SFKYAWVL K+KAERERGITIDI+LWKFET + +  +IDAPGHRDFIKNMITGTSQAD A+L+  S  G FEAG SK+GQTREHALLA TLGVKQMI CCNKMD  +  YS+ARY EI  E++S+L
Sbjct:    1 MGKEKPHINLVVIGHVVAGKSTTTGHLIYACGGIDKRTIERFEEGGQRIGKGSFKYAWVLAKMKAERERGITIDISLWKFETRKDFFTIIDAPGHRDFIKNMITGTSQADVAILVIASGAGEFEAGYSKNGQTREHALLANTLGVKQMIVCCNKMDDKSVNYSEARYKEIKNEMTSFL 178          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.396e-61
Identity = 120/175 (68.57%), Postives = 138/175 (78.86%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPK----YSKARYDEIV 594
            MGKEKTHIN+VVIGHVD+GKSTT G LIYKLGGID R I + E +A EM K SFKYAWVLDKLKAERERGITIDIALWKF T ++   VIDAPGHRDFIKNMITGTSQAD A+L+ D     FEAGI++ G T+EHALLA+TLGVKQ+    NKMD    K    +++ RY+E+V
Sbjct:    1 MGKEKTHINLVVIGHVDAGKSTTTGHLIYKLGGIDARTIAKFEADAKEMGKSSFKYAWVLDKLKAERERGITIDIALWKFSTAKFEYTVIDAPGHRDFIKNMITGTSQADVALLVIDG--NNFEAGIAEGGSTKEHALLAYTLGVKQLAVGINKMDDVKDKDGGPWAQGRYNEVV 173          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.217e-58
Identity = 103/178 (57.87%), Postives = 136/178 (76.40%), Query Frame = 1
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            M ++K HIN+VVIGHVD GKST  G L+Y+LG +D++ I+ +E+EA +  K SFKYAW+LD+LK ERERG+TID+   KFET +YY  +IDAPGHRDF+KNMITG SQAD A+L+  +  G FEAG+S +GQTREH +LA T+G+ Q+I   NKMDA  P YSK RY++IV  +  ++
Sbjct:    1 MSQQKPHINLVVIGHVDHGKSTLVGHLLYRLGFVDEKTIKMLEEEAKKKGKESFKYAWLLDRLKEERERGVTIDLTFVKFETKKYYFTIIDAPGHRDFVKNMITGASQADAAILVVSARRGEFEAGMSAEGQTREHLILAKTMGIDQLIVAVNKMDATEPPYSKQRYEQIVAFLKKFM 178          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.597e-57
Identity = 102/176 (57.95%), Postives = 135/176 (76.70%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            KEK H+N++VIGHVD GKST  G L+Y+LG +D++ ++ +E+EA +  K SFKYAW+LDKLK ERERG+TID+   KFET +YY  +IDAPGHRDFIKNMITG SQAD A+L+  +  G FEAG+S +GQTREH LLA T+G+ Q+I   NKMDA  P +S+ RY +IV+ +  ++
Sbjct:    4 KEKPHMNLIVIGHVDHGKSTLVGHLLYELGFVDEKTLKMLEEEAKKRGKESFKYAWLLDKLKEERERGVTIDLTFMKFETPKYYFTIIDAPGHRDFIKNMITGASQADAAILVVSARPGEFEAGMSAEGQTREHILLAKTMGIDQIIVAVNKMDATEPPWSEKRYKQIVETLKKFM 179          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.035e-56
Identity = 110/176 (62.50%), Postives = 139/176 (78.98%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            KEK H+N+VVIGHVDSGKSTT G LIYKLGGID+R + ++E++A E+NK SFKYA+VLD LKAE+ERGITI+ AL +F+T      +IDAPGH+DFIKNMITGTSQAD AVLI  +  G FE G S++G T++HALLA+T+G+KQ I   NKMD  T  Y + R++EIV+ VS +L
Sbjct:    4 KEKDHLNLVVIGHVDSGKSTTTGHLIYKLGGIDERTLAKLEEKALELNKASFKYAFVLDNLKAEQERGITINCALRQFDTPSRSYTIIDAPGHKDFIKNMITGTSQADAAVLIIAAKKGEFEDGFSREGSTKDHALLAYTMGIKQAIVAINKMD--TIDYDEERFNEIVENVSDHL 177          
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.933e-56
Identity = 110/158 (69.62%), Postives = 120/158 (75.95%), Query Frame = 1
Query:  142 STTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            ST  G LIYK GGID+R I   EK A EM K SFKYAWVLD+LK ERERGITI+IALWKFET +Y   +IDAPGHRDFIKNMITGTSQAD A+L+  +  G FEAGISKDGQTREHA LA TLG+K MI C NKMD    KYSK RYDEI  E+   L
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDGQTREHATLANTLGIKTMIICVNKMDDGQVKYSKERYDEIKGEMMKQL 158          
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ADIBE1.818e-6978.66Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_STYLE9.025e-6973.03Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_CRYPV3.429e-6873.60Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A1_XENLA4.479e-6868.00Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_BLAHO2.458e-6670.22Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1AS_PORPU1.396e-6168.57Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_HYPBU3.217e-5857.87Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_IGNH41.597e-5757.95Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A2_EUPCR1.035e-5662.50Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_GIALA3.933e-5669.62Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
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