CN188928

Overview
NameCN188928
Unique NameCN188928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 51/175 (29.14%), Postives = 92/175 (52.57%), Query Frame = -1
Query:  219 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHE-ALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 740
            E+G +K G      P+    E++++    E  +  A+ G+ V   +K V  +D+  GFV ++ K+ P +    F +Q+ I+     I  G++ V+  HT+   V   +L+ K+++ + ++ +K P F K G   +  +    P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  510 ESGHIKKGQSTLLMPNKTAVEIQNIYNETENEVDMAMCGEQVKLRIKGVEEEDISPGFVLTSPKN-PIKSVTKFVAQIAIVELKSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 683          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 50/172 (29.07%), Postives = 91/172 (52.91%), Query Frame = -1
Query:  228 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA-LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 740
            E+G +K G  +   P+    EV ++    EA    A  G+ V   ++ +  +DL  G+V S S + P +    F +Q+ I+     +  G++ V+  HT+   V F++L+  + + + +  +K P F K G   +  +  T+P+ +E++ DYP LGRF +RD  QT+A+G +
Sbjct:  567 ESGHVKKGQNLLVMPNKTQVEVTTIYNETEAEADSAFCGEQVRLRLRGIEEEDLSAGYVLS-SINHPVKTVTRFEAQIAIVELKSILSTGFSCVMHVHTAIEEVTFTQLLHNLQKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQGQTIAIGKV 737          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 49/179 (27.37%), Postives = 93/179 (51.96%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 740
            E+G +  G  +   P+    EV  +           PG+N+   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  322 ESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDL-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 49/179 (27.37%), Postives = 93/179 (51.96%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 740
            E+G +  G  +   P+    EV  +           PG+N+   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  322 ESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 49/179 (27.37%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 740
            E+G +  G  +   P+  + EV  +           PG+N+   +K +  +++  GF+     +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  455 ESGSIFKGQQLVMMPNKHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 632          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 49/175 (28.00%), Postives = 94/175 (53.71%), Query Frame = -1
Query:  219 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA-LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 740
            E+G ++ G      P+  + E+ ++    E+ +  A+ G+ V   +K V  +++  GFV ++ K+ P +    F +Q+ I+     +  G++ V+  HT+   V  + L+ K+++ S ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  524 ESGHIRKGNQTLLMPNRTSVEILTIYNETESEVDMAVCGEQVRLRIKGVEEEEISAGFVLTSPKN-PVKNVTRFVAQIAIVELKSIMSAGFSCVMHIHTAIEEVTVTRLLHKLEKGSNRKSKKPPAFAKKGMKIIAVIETNEPVCVETYDDYPQLGRFTLRDQGTTIAIGKIVKI 697          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 54/174 (31.03%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  228 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQE---ALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 740
            E+G +K G  +   P+    EV ++   +E  QE   A  G+ V   +K +  +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +   + +  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  541 ESGHVKKGTNLIMMPNKTPIEVLTI--FNETEQECDTAFSGEQVRLKIKGIEEEDLQPGYVLTSPKN-PVKTVTRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGTTIAIGKI 711          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 49/179 (27.37%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 740
            E+G +  G  +   P+    EV  +           PG+N+   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  451 ESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 49/179 (27.37%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVEKKD 740
            E+G +  G  +   P+    EV  +           PG+N+   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  451 ESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = -1
Query:  219 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQE---ALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 740
            E+G +K G  +   P+  + EV  V + +E  QE   A  G+ V   +K V  +DL  G+V + S   P +    F +Q+ I+     + NG++ V+  HT+   V F EL  K+++ + ++ +K P F K G   +  +   + +  ET++DYP LGRF +RD   T+A+G I  V
Sbjct:  527 ESGHIKKGGNLLLMPNKASIEV--VAIFNETEQECDAAFCGEQVRLKIKGVEEEDLAPGYVLT-SPLKPIKTITRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVTFIELKHKLEKGTNRKSKKPPAFAKKGMKVIAILETNESVCAETYADYPQLGRFTLRDQGTTIAIGKITKV 700          
The following BLAST results are available for this feature:
BLAST of CN188928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
ERF3_YEAST5.983e-1829.14Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI1.021e-1729.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE1.333e-1727.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN1.333e-1727.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE2.274e-1727.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA2.969e-1728.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL2.969e-1731.03Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.969e-1727.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.969e-1727.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA1.474e-1631.64Eukaryotic peptide chain release factor GTP-bindin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188928 ID=CN188928; Name=CN188928; organism=Citrus sinensis; type=EST; length=740bp
TTTTTTTTTTTTTTTTTATCACTTACCAAAAAAAAACTCTGATATAAAAC
CAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGAC
AAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCC
CAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACC
TGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTCT
GACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAG
GTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATC
TCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCC
TATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTG
TGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTT
CATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCAT
CCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACG
TTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGC
TTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGC
CAAATGTCACCACCATACCAGGCTTGAGGACACCGGTCTC
back to top