CN188901

Overview
NameCN188901
Unique NameCN188901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  489 LERICMVTLFSVGVQLCSPVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            L+R  M  +   G       F +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  353 LKRDLMGNILLCGGSTMLSGFPNRLQKELSSMCPNDTP-QVSVLPERDTAVWTGGSILASLQGFQPLWVHRSEYEEHGPFFLYRRCF 438          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.624e-11
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = -1
Query:  516 PVFADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 695
            P  +DR+  E+    P+ +K +V+A     ER+Y  W+GGSIL+SL TF Q+WI K EY+E G
Sbjct:  422 PGLSDRILNELNMKFPA-LKFRVLATGQSIERQYQSWLGGSILSSLGTFHQLWIGKKEYEEVG 483          

HSP 2 Score: 32.3426 bits (72), Expect = 2.624e-11
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = -3
Query:  688 CDGDIRKDLYGNIVLSGGSTMFPGI 762
            CD DIR  L  N+V++GGS+  PG+
Sbjct:  400 CDVDIRASLAHNLVITGGSSTIPGL 424          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.442e-11
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = -1
Query:  507 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 656
            L P  + ++V++   ++Y+VW GGS+LAS S F Q+  +K EY E GPSI
Sbjct:  365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414          

HSP 2 Score: 38.1206 bits (87), Expect = 4.442e-11
Identity = 17/32 (53.12%), Postives = 22/32 (68.75%), Query Frame = -3
Query:  670 KCDGDIRKDLYGNIVLSGGSTMFPGICRPYEQ 765
            +C  D+R+ LY NIVLSGGSTMF    R  ++
Sbjct:  313 QCPIDVRRGLYENIVLSGGSTMFKDFARKLQR 344          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.762e-11
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  492 FADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP---SIVHRKC 689
            F+ R+  E++ L P S ++K+ A     ER Y+ W+GGSIL+SL TF Q+WIS+ EY+E G    +++ ++C
Sbjct:  362 FSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432          

HSP 2 Score: 28.8758 bits (63), Expect = 5.762e-11
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = -3
Query:  691 KCDGDIRKDLYGNIVLSGGSTMFPG 765
            +CD DIR  L  N+++ GG+++  G
Sbjct:  337 ECDVDIRASLLNNVIVCGGTSLMQG 361          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACL7A_MACFA (Actin-like protein 7A OS=Macaca fascicularis GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  489 LERICMVTLFSVGVQLCSPVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            L+R  M  +   G       F +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  350 LKRDLMGNILLCGGSTMLSGFPNRLQKELSSMCPNDTP-QVNVLPERDSAVWTGGSILASLQGFQPLWVHRFEYEEHGPFFLYRRCF 435          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACL7A_HUMAN (Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  489 LERICMVTLFSVGVQLCSPVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            L+R  M  +   G       F +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  350 LKRDLMGNILLCGGSTMLSGFPNRLQKELSSMCPNDTP-QVNVLPERDSAVWTGGSILASLQGFQPLWVHRFEYEEHGPFFLYRRCF 435          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACL7A_RAT (Actin-like protein 7A OS=Rattus norvegicus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  489 LERICMVTLFSVGVQLCSPVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            L+R  M  +   G       F +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  355 LKRDLMGNILLCGGSTMLRGFPNRLQKELSSMCPNDTP-QVNVLPERDTAVWTGGSILASLQGFQPLWVHRLEYEEHGPFFLYRRCF 440          
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACL7A_MOUSE (Actin-like protein 7A OS=Mus musculus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  489 LERICMVTLFSVGVQLCSPVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            L+R  M  +   G       F +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  355 LKRDLMGNILLCGGSTMLRGFPNRLQKELSSMCPNDTP-QVNVLPERDTAVWTGGSILASLQGFQPLWVHRLEYEEHGPFFLYRRCF 440          
The following BLAST results are available for this feature:
BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
ACL7A_BOVIN2.005e-1139.08Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ARP4_CANGA2.624e-1146.03Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP3_CAEEL4.442e-1146.00Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ARP4_SCHPO5.762e-1141.67Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ACL7A_MACFA5.835e-1139.08Actin-like protein 7A OS=Macaca fascicularis GN=AC... [more]
ACL7A_HUMAN5.835e-1139.08Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE... [more]
ACL7A_RAT9.953e-1139.08Actin-like protein 7A OS=Rattus norvegicus GN=Actl... [more]
ACL7A_MOUSE9.953e-1139.08Actin-like protein 7A OS=Mus musculus GN=Actl7a PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA
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