CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_EXODE (Actin OS=Exophiala dermatitidis PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.510e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPSSMK++++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSSMKVRIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 53.5286 bits (127), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_BOTFU (Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.510e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGISDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 53.5286 bits (127), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.510e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGISDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 53.5286 bits (127), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.510e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGISDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 53.5286 bits (127), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.510e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGISDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 53.5286 bits (127), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.968e-39
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = -1

Query:  489 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 686
            ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377

HSP 2 Score: 52.7582 bits (125), Expect = 1.968e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMF GI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFSGI 311

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.968e-39
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = -1

Query:  489 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 686
            ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377

HSP 2 Score: 52.7582 bits (125), Expect = 1.968e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMF GI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFSGI 311

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.564e-39
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1

Query:  489 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 683
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 52.373 bits (124), Expect = 2.564e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMF GI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFGGI 311

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.564e-39
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -1

Query:  489 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 683
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 52.373 bits (124), Expect = 2.564e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMF GI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFGGI 311

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_NEUCR (Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.564e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGLSDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 52.7582 bits (125), Expect = 2.564e-39
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PG+
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGL 309

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACT_EXODE	1.510e-39	88.41	Actin OS=Exophiala dermatitidis PE=3 SV=1	[more]
ACT_BOTFU	1.510e-39	88.41	Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1	[more]
ACT_AJECG	1.510e-39	88.41	Actin OS=Ajellomyces capsulata (strain ATCC 26029 ...	[more]
ACTG_PENCH	1.510e-39	88.41	Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=...	[more]
ACTG_EMENI	1.510e-39	88.41	Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S...	[more]
ACT8_ARATH	1.968e-39	95.45	Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2	[more]
ACT2_ARATH	1.968e-39	95.45	Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1	[more]
ACT4_ARATH	2.564e-39	96.92	Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1	[more]
ACT12_ARATH	2.564e-39	96.92	Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=...	[more]
ACT_NEUCR	2.564e-39	88.41	Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2	[more]

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Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA