CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CAMC5 (Bifunctional protein folD OS=Campylobacter curvus (strain 525.92) GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 77/152 (50.66%), Postives = 101/152 (66.45%), Query Frame = -1
Query:  157 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 612
            F+PCTP G + +L   G+++ G NAVVIGRSNIVG P + LL    ATV+I H+ T+N +QI S AD+++AA G  N V    +K GA+V+DVG   +D           RL+GDV +E     +S ITPVPGGVGPMT+AMLLSNT+ SA+
Sbjct:  135 FVPCTPLGIMRILKEYGIDVAGLNAVVIGRSNIVGKPMASLLLNASATVTITHSKTRNLKQICSAADLIVAAIGKPNFVTADMVKEGAIVIDVGINRLDDG---------RLVGDVDFEAVAPKSSFITPVPGGVGPMTIAMLLSNTIRSAQ 277          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BAUCH (Bifunctional protein folD OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G L  R   PL  PCTP+G I LL R  + I+G NAVV+G SNIVG P  + L     TV+I H  T+N +Q    AD+++ A G A  + GSW+K GA+V+D+G          +C    +++GDV + EA+  A+ ITPVPGGVGPMTVA L+ NTL + K
Sbjct:  127 NLGRLCQRA--PLLRPCTPRGVITLLERYNINIVGLNAVVVGASNIVGRPMGMELLLAGCTVTITHRFTRNLQQHVQNADLLVVAVGKAGFIPGSWIKSGAIVIDIGI---------NCLDNGKVVGDVNFSEAIERAAYITPVPGGVGPMTVATLIQNTLQACK 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AZOVD (Bifunctional protein folD OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 82/168 (48.81%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G  + G +A V+G SNIVG P +L L     TV++ H  T+N  +  S AD+VIAAAG   LV+G W+KPGA+V+DVG   +D           RL+GDV +  A   A  ITPVPGGVGPMT A LL NTL +A++ +
Sbjct:  127 NIGRLAQR--MPLLRPCTPKGIMTLLQSTGANLYGLDATVVGASNIVGRPMALELLLAGCTVTVTHRFTRNLAEHVSRADLVIAAAGKPGLVKGEWIKPGAIVIDVGINRLDDG---------RLVGDVEFSSAAARAEWITPVPGGVGPMTRACLLENTLHAAEQLH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRU0 (Bifunctional protein folD OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=folD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 80/167 (47.90%), Postives = 109/167 (65.27%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N G+L   GR P+ +PCTP G +E+L    +++ GK+AV+IGRSNIVG P + LL   +ATV++ H+ T+N  +I+SEAD++I A G  + V   ++K GAVV+DVG    D           +L+GDV +EE  R AS ITPVPGGVGPMT+ MLL  T  SA R
Sbjct:  125 MNTGHL-WSGR-PIMVPCTPAGIMEMLSEYQIDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSKISSEADVLIVAIGQGHFVTEEYVKEGAVVIDVGMNRDD---------NGKLIGDVAFEEVSRKASYITPVPGGVGPMTITMLLEQTYQSALR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PHEZH (Bifunctional protein folD OS=Phenylobacterium zucineum (strain HLK1) GN=folD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 78/171 (45.61%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA     P  +PCTP GC+ +L  +  ++ GK AVV+GRS +VG P + LL +   TV+I H+ T +   +  EADI++AA G   ++RG W+KPGA V+DVG   V          G  +L+GDV Y+EA+++A  +TPVPGGVG MTVA LL NT+ +AKR  G
Sbjct:  126 VNAGRLA--SGLPALVPCTPLGCLIMLRETLGDLTGKRAVVVGRSLLVGKPVAQLLLQADCTVTIAHSRTVDLPAVCREADILVAAVGRPRMIRGDWIKPGATVIDVGINRVPFDDPEKAAQGKTKLVGDVHYKEALQVAGAVTPVPGGVGLMTVACLLQNTVTAAKRLAG 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GEOTN (Bifunctional protein folD OS=Geobacillus thermodenitrificans (strain NG80-2) GN=folD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 73/167 (43.71%), Postives = 108/167 (64.67%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+G + +   +P F+PCTP G + ++  +G++I GK+ VV+GRSNIVG P   L  R HATV+  H+ T +   IT +ADI+I A G A L+    +KPGAVV+DVG   ++           +L GDV ++    +AS +TPVPGGVGPMT+ MLL NT+++A++
Sbjct:  125 INVGKMMIG--QPAFLPCTPHGVLVMVKSAGIDIAGKHVVVVGRSNIVGKPVGQLFLREHATVTYAHSKTPDLAAITRQADILIVAVGKARLIGPEHVKPGAVVIDVGVNRLESG---------KLCGDVDFDAVKEVASYVTPVPGGVGPMTITMLLHNTMEAARQ 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_EUBR3 (Bifunctional protein folD OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=folD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  154 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 621
            +P F+PCTP G I+LL RS ++I GK+ VV+GRSNIVG P SLL+ R +ATV++ H+ TK+ + +   ADI+I A G    +  S++K GAVV+DVG       +  + E   +L GDV ++  +  AS ITPVPGGVGPMT+AML+SN +++ KR
Sbjct:  133 KPGFLPCTPAGIIQLLKRSNIDIDGKSCVVVGRSNIVGKPMSLLMLRENATVTVCHSHTKDLKDVCKNADILIVAIGKPKFIDASYVKDGAVVIDVG-------IHRNAE--NKLCGDVDFDSVVSKASHITPVPGGVGPMTIAMLMSNCVEAMKR 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AGRT5 (Bifunctional protein folD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=folD PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            LN G LA        I CTP G + LL+R   G ++ G NAVVIGRSN+ G P   LL   +ATV++ H+ TK+   +   ADI++AA G A +V+G W+KPGA V+DVG     ++     E   +L+GDV ++EA  +A+ ITPVPGGVGPMT+AML++NT+ +A RA G T
Sbjct:  125 LNAGKLATGDLATGLISCTPAGAM-LLVRGIHGDDLSGLNAVVIGRSNLFGKPMGQLLLNANATVTMAHSRTKDLVTVCKTADILVAAVGRAAMVKGDWVKPGATVIDVGI--NRIAAPEKGEGKSKLVGDVAFDEASAVAAAITPVPGGVGPMTIAMLMANTVIAAHRALGKT 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_OPITP (Bifunctional protein folD OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=folD PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 83/166 (50.00%), Postives = 109/166 (65.66%), Query Frame = -1
Query:  169 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 654
            +N+G +A +  +  F+ CTP G +ELL RSGV++ GK+ VV+GRS +VG P +LL  +  A    TV+I H+ TK+   IT +AD++IAA G A  V    +KPG VV+DVG   V  S   S   GYRL+GDV +     LAS ITPVPGGVGPMTVAML+ NT+
Sbjct:  121 MNLGKVA-QDDDTGFVSCTPAGIMELLSRSGVDLKGKHVVVVGRSLLVGKPVALLALQKKAGANGTVTICHSATKDLPAITRQADVLIAAIGRAGFVTADMVKPGVVVIDVGINRVPDSTKKS---GYRLVGDVDFPAVSPLASQITPVPGGVGPMTVAMLMKNTV 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DEHE1 (Bifunctional protein folD OS=Dehalococcoides ethenogenes (strain 195) GN=folD1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 82/175 (46.86%), Postives = 116/175 (66.29%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM-GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G + +   EP F+PCTP G  ELLIRSG++I G + V++GRSN+VG P  ++LLQ+    +ATV+I H+ TKN   ITS+ADI+++A G    +    ++ GAVV+DVGT  +  + +     G R++ GDV +E     A  ITPVP GVGPMT+ ML+ NTL +AKRA G
Sbjct:  126 VNVGRMCLG--EPCFLPCTPHGVQELLIRSGIKIEGTHVVIVGRSNLVGKPLANILLQKAPGANATVTICHSGTKNLPLITSQADILVSAMGKPKFITADMVRQGAVVIDVGTTCIGYTPE-----GKRILSGDVDFEAVKEKAFAITPVPKGVGPMTIIMLMLNTLTAAKRAAG 293          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CAMC56.299e-3450.66Bifunctional protein folD OS=Campylobacter curvus ... [more]
FOLD_BAUCH6.299e-3446.06Bifunctional protein folD OS=Baumannia cicadellini... [more]
FOLD_AZOVD6.299e-3448.81Bifunctional protein folD OS=Azotobacter vinelandi... [more]
FOLD_STRU08.226e-3447.90Bifunctional protein folD OS=Streptococcus uberis ... [more]
FOLD_PHEZH8.226e-3445.61Bifunctional protein folD OS=Phenylobacterium zuci... [more]
FOLD_GEOTN8.226e-3443.71Bifunctional protein folD OS=Geobacillus thermoden... [more]
FOLD_EUBR38.226e-3448.72Bifunctional protein folD OS=Eubacterium rectale (... [more]
FOLD_AGRT58.226e-3447.13Bifunctional protein folD OS=Agrobacterium tumefac... [more]
FOLD_OPITP1.074e-3350.00Bifunctional protein folD OS=Opitutus terrae (stra... [more]
FOLD_DEHE11.074e-3346.86Bifunctional protein folD OS=Dehalococcoides ethen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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