CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CYTH3 (Bifunctional protein folD OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=folD PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 76/157 (48.41%), Postives = 109/157 (69.43%), Query Frame = -1
Query:  160 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 618
            P ++P TP G ++LL R+G+E  GK+ VV+GRS+IVG P S+L+ R+    +ATV++VH+ TKN +++T +ADI+I A G    V    +K GAVV+DVG   +D   D + + G+RL+GDV ++E     S I+PVPGGVGPMT+A LL NTL +A
Sbjct:  134 PTYLPATPYGIMQLLERNGIETSGKHCVVMGRSHIVGSPMSILMARNTNPGNATVTMVHSRTKNLKELTLQADILIVAIGKPEFVTADMVKEGAVVVDVGIHRID---DATKKSGFRLLGDVKFDEVAPKTSYISPVPGGVGPMTIASLLMNTLQAA 287          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_RHIEC (Bifunctional protein folD 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=folD2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA    +   + CTP G +  + R+ G ++ G NAVVIGRSN+ G P + LL   +ATV+I H+ TKN  ++   ADI++AA G   +V+  W+KPGA V+DVG     ++  P+ E G    RL+GDV + E   +A  ITPVPGGVGPMT+AML++NT+ +A RA G
Sbjct:  125 VNAGKLATGDLKTGLVSCTPAGAMVFVRRTHGEDLSGLNAVVIGRSNLFGKPMAQLLLNANATVTIAHSRTKNLAEVCRNADILVAAVGRPEMVKADWVKPGATVIDVG-----INRVPAPEKGEGKTRLVGDVAFREVSEIAGTITPVPGGVGPMTIAMLMANTVIAAHRAAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_PSEU2 (Bifunctional protein folD 2 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=folD2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 79/167 (47.31%), Postives = 112/167 (67.07%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L+ +GR  L  PCTP GC+ LL  +  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + +   +   ADIV+AA G   L+  SWLK GAVV+DVG   ++       ++G  RL+GDV +  A  +AS ITPVPGGVGPMT+A L+ NT+ +A++
Sbjct:  126 NVGGLS-QGRNVL-TPCTPSGCLHLLEETCGDLSGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDARALCQLADIVVAAVGRPRLIDASWLKRGAVVIDVGINRIE-------DHGRSRLVGDVDFASATEVASAITPVPGGVGPMTIAFLMKNTVTAARQ 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_SPHWW (Bifunctional protein folD 1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 83/170 (48.82%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L++ G + L +PCTP GC+ LL     +  G  AVVIG+SNIVG P ++LL     TV++ H LT+N   I   ADIV+ AAG   LVRG W++PGAVV+DVG   +      S     RL+GD  ++E +  A+ ITPVPGGVGPMTVA LL NTL +A+R  G
Sbjct:  125 VNVGRLSI-GTDGL-VPCTPLGCMLLLETVIDDFRGLKAVVIGKSNIVGKPVAMLLLERECTVTVTHILTRNLPDIVRTADIVVVAAGSPGLVRGDWVRPGAVVIDVGINRIGEPGKDS-----RLVGDAAFDE-LGHAAAITPVPGGVGPMTVACLLRNTLVAARRQQG 286          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SYNP6 (Bifunctional protein folD OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=folD PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 85/170 (50.00%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            LN+G L +RG E L   CTP G +ELL  + ++  GK AVVIGRS +VG P +++L   +ATV+I H+ T N  ++  +ADIV+AA G   LV   W+KPGAVV+DVG   ++           RL+GDV YE A  + S ITPVPGGVGPMTVAMLL NT+ S  R  G
Sbjct:  126 LNLGRL-LRGEEGLR-SCTPAGVMELLAANQIDPAGKKAVVIGRSILVGKPLAMMLLEANATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKPGAVVVDVGINRLEDG---------RLVGDVDYEAASAITSWITPVPGGVGPMTVAMLLHNTVLSYCRRSG 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SYNE7 (Bifunctional protein folD OS=Synechococcus elongatus (strain PCC 7942) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 85/170 (50.00%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            LN+G L +RG E L   CTP G +ELL  + ++  GK AVVIGRS +VG P +++L   +ATV+I H+ T N  ++  +ADIV+AA G   LV   W+KPGAVV+DVG   ++           RL+GDV YE A  + S ITPVPGGVGPMTVAMLL NT+ S  R  G
Sbjct:  126 LNLGRL-LRGEEGLR-SCTPAGVMELLAANQIDPAGKKAVVIGRSILVGKPLAMMLLEANATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKPGAVVVDVGINRLEDG---------RLVGDVDYEAASAITSWITPVPGGVGPMTVAMLLHNTVLSYCRRSG 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEAE (Bifunctional protein folD OS=Pseudomonas aeruginosa GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG   LV+G W+K GA+V+DVG   ++   D       RL+GDV YE A + AS ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVG---INRQADG------RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEAB (Bifunctional protein folD OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG   LV+G W+K GA+V+DVG   ++   D       RL+GDV YE A + AS ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVG---INRQADG------RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEA8 (Bifunctional protein folD OS=Pseudomonas aeruginosa (strain LESB58) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG   LV+G W+K GA+V+DVG   ++   D       RL+GDV YE A + AS ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVG---INRQADG------RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEA7 (Bifunctional protein folD OS=Pseudomonas aeruginosa (strain PA7) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG   LV+G W+K GA+V+DVG   ++   D       RL+GDV Y+ A R AS ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLAAHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVG---INRQADG------RLVGDVEYDVAARRASWITPVPGGVGPMTRACLLENTLHAAEHLH 283          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CYTH31.074e-3348.41Bifunctional protein folD OS=Cytophaga hutchinsoni... [more]
FOLD2_RHIEC1.074e-3345.40Bifunctional protein folD 2 OS=Rhizobium etli (str... [more]
FOLD2_PSEU21.074e-3347.31Bifunctional protein folD 2 OS=Pseudomonas syringa... [more]
FOLD1_SPHWW1.074e-3348.82Bifunctional protein folD 1 OS=Sphingomonas wittic... [more]
FOLD_SYNP61.403e-3350.00Bifunctional protein folD OS=Synechococcus sp. (st... [more]
FOLD_SYNE71.403e-3350.00Bifunctional protein folD OS=Synechococcus elongat... [more]
FOLD_PSEAE1.403e-3348.81Bifunctional protein folD OS=Pseudomonas aeruginos... [more]
FOLD_PSEAB1.403e-3348.81Bifunctional protein folD OS=Pseudomonas aeruginos... [more]
FOLD_PSEA81.403e-3348.81Bifunctional protein folD OS=Pseudomonas aeruginos... [more]
FOLD_PSEA71.403e-3348.81Bifunctional protein folD OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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