CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HALOH (Bifunctional protein folD OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 82/166 (49.40%), Postives = 103/166 (62.05%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N G L        F  CTP G IELL R G+EI GK AVV+GRSNIVG P + LL   HATV++ H+ T +    T +ADI++ AAG   LV+G  +K GA V+DVGT  VD            L+GDV +E A + A  ITPVPGGVGPMT+AML+ NT+ + K
Sbjct:  124 INTGKLFSGMTGQRFEACTPLGIIELLDREGIEIDGKKAVVVGRSNIVGKPVAHLLLERHATVTVCHSHTADLGIETRQADILVVAAGRPKLVKGEMVKEGAAVIDVGTNRVD----------GHLVGDVDFEAARQRAGYITPVPGGVGPMTIAMLMKNTVKARK 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DESAA (Bifunctional protein folD OS=Desulfatibacillum alkenivorans (strain AK-01) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 81/175 (46.29%), Postives = 108/175 (61.71%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR-LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L + G E  F PCTP G  E+++R+GVE  G   VV+GRSNIVG P  ++++Q+    ++TV+IVH  TK+       ADI+I AAGV  LV+  W+K GA V+DVG   V   +          L GDV ++ A  +A  ITPVPGGVGPMT+ ML+ NTL S K A G
Sbjct:  126 VNVGRLMIGGDEVKFAPCTPAGIQEMIVRAGVETSGAEVVVVGRSNIVGKPIANMMVQKGPGANSTVTIVHTRTKDLAAHCQRADILIVAAGVPGLVKPEWIKKGACVIDVGVNRVGTKISEKTGKEIAVLRGDVDFDAAKEIAGSITPVPGGVGPMTITMLMVNTLKSFKFANG 300          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACSU (Bifunctional protein folD OS=Bacillus subtilis GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LN+G + +   E  F+PCTP G +ELL ++ +++ GK  VV+GRSNIVG P   LL   +ATV+  H+ T+N  + T +ADI++ A G AN +    +K GAVV+DVG   ++           +L GDV +E A   AS ITPVPGGVGPMT+ ML  NT+ SAKR
Sbjct:  125 LNVGKMLLG--EDTFLPCTPHGIVELLKKTNIDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTENITEHTKKADILVVAVGRANFISADQIKEGAVVIDVGVNRLE---------NGKLCGDVEFEGAKEKASFITPVPGGVGPMTITMLAHNTVKSAKR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ANAMM (Bifunctional protein folD OS=Anaplasma marginale (strain St. Maries) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 76/161 (47.20%), Postives = 104/161 (64.60%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N G LA  G+    IPCTP+GCI L+     ++ G NAVV+GRSNIVG P +LLL   + TV+++H+ ++N E+    ADI++AA G A  +R SW+KPGA+V+DVG   V+ S         R +GDV +E    +   +TPVPGGVGPMT+A LL NT+
Sbjct:  126 NAGKLAT-GQLDCMIPCTPQGCIHLIKTVKQDLAGSNAVVVGRSNIVGKPVALLLLYENCTVTVLHSASRNLEEHCLRADIIVAAVGKARFIRASWIKPGAIVVDVGINLVEESGKK------RFVGDVEFEGLQDVPCSVTPVPGGVGPMTIAFLLVNTV 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ANADF (Bifunctional protein folD OS=Anaeromyxobacter sp. (strain Fw109-5) GN=folD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = -1
Query:  157 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 606
            PCTP G + LL  + V+  GK A+V+GRSNIVG P + +L   HATV+I H+ T++     + ADIV+AA G A L+RG W++ GAVV+DVG   +D           RL+GDV Y  A R AS ITPVPGGVGPMT AMLL NT++ A+
Sbjct:  137 PCTPAGVMRLLDEARVDPKGKRAIVVGRSNIVGKPMAAMLLERHATVTIAHSRTQDLAGEVARADIVVAAIGKAELIRGEWIREGAVVIDVGMNRLDDG---------RLVGDVEYAAAARRASAITPVPGGVGPMTRAMLLVNTIELAR 277          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_ROSDO (Bifunctional protein folD 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=folD2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 79/170 (46.47%), Postives = 102/170 (60.00%), Query Frame = -1
Query:  145 NIGNLAMRGR-EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            +I N+ + G  +   +PCTP GC+ +L      + G NAVVIGRSNIVG P + LL     TV+I H+ TK+   +   ADIV+AA G   +V G W+KPGA V+DVG   +D       E   RL+GD  Y+     A  ITPVPGGVGPMT+A LL+NT+ S  RA G
Sbjct:  124 HISNVGLLGTGQKSMVPCTPLGCLMMLREHHGSLSGMNAVVIGRSNIVGKPMAQLLLNDSCTVTIAHSRTKDLPDVVRGADIVVAAVGRPEMVPGDWIKPGATVIDVGINRID--APEKGEGKTRLVGDCHYDSCAETAGAITPVPGGVGPMTIACLLANTVTSCCRANG 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEU5 (Bifunctional protein folD OS=Pseudomonas stutzeri (strain A1501) GN=folD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 79/168 (47.02%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G LA R   PL  PCTPKG + LL  +GV++ G +AVV+G SNIVG P +L L     T ++ H  T+N  +    AD+V+ A G+  LV+G W+KPGA+V+DVG   ++   D       RL+GDV +E A   A+ ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NVGRLAQR--MPLLRPCTPKGIMTLLESTGVDLHGLDAVVVGASNIVGRPMALELLLAGCTTTVTHRFTRNLAEHVRRADLVVVATGITGLVKGEWIKPGAIVIDVG---INRQTDG------RLLGDVEFEPASERAAWITPVPGGVGPMTRACLLENTLYAAEHLH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_JANSC (Bifunctional protein folD OS=Jannaschia sp. (strain CCS1) GN=folD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 79/169 (46.75%), Postives = 106/169 (62.72%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N G L+  G     + CTP GC+ LL      + GK+AVVIGRSN+ G P + LL   + TV+I H+ TK+   +   ADI++AA G A +VRG W+KPGA V+DVG   V     P      +L+GDV + EA+ +A  ITPVPGGVGPMT+A LL+NT+ +  RA+G
Sbjct:  136 NAGLLSSGGEA--LVSCTPLGCLMLLRAEFDSLSGKDAVVIGRSNLFGKPMAQLLLGDNCTVTIAHSRTKDLADVCRRADILVAAVGRAEMVRGDWIKPGATVIDVGISRVP---HPDKPGKTKLIGDVHFAEAVDVAGAITPVPGGVGPMTIACLLANTVTACCRAHG 299          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GRAFK (Bifunctional protein folD OS=Gramella forsetii (strain KT0803) GN=folD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 81/170 (47.65%), Postives = 108/170 (63.53%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N G +A+      FIP TP G +ELL R  +   GK+ VVIGRS IVG P S+L+ R     ++TV++ H  TKN  Q+TS+ADI+I A G+ + ++G  +K  AV++DVG   V    D   E GY + GDV +E   + AS ITPVPGGVGPMTV+MLL NTL + +R
Sbjct:  125 NFGKMALDMTS--FIPATPFGILELLERYDIPTKGKHTVVIGRSYIVGRPMSILMGRSGFPGNSTVTLTHEFTKNITQVTSQADIIIIAVGIPDFLKGEMIKDDAVIIDVGITRVP---DDHAERGYVIKGDVDFENVSKRASFITPVPGGVGPMTVSMLLKNTLLARER 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ACIAC (Bifunctional protein folD OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=folD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 76/158 (48.10%), Postives = 104/158 (65.82%), Query Frame = -1
Query:  145 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 618
            P F PCTP GC+++L   G ++ GK+AVVIGRSNIVG P +L+L    ATV++ H+ T + +  T +AD+++AA G  N++    +KPGAVV+DVG    D           RL GDV ++    +A  ITPVPGGVGPMT+ MLL NTL++A+RA G
Sbjct:  135 PGFWPCTPYGCMKMLEHIGYDLRGKHAVVIGRSNIVGKPMALMLLAKDATVTVCHSRTADLKAQTLQADVIVAAVGRRNVLTADMVKPGAVVIDVGMNRNDEG---------RLCGDVDFDGVREVAGHITPVPGGVGPMTITMLLVNTLEAAERAAG 283          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_HALOH1.403e-3349.40Bifunctional protein folD OS=Halothermothrix oreni... [more]
FOLD_DESAA1.403e-3346.29Bifunctional protein folD OS=Desulfatibacillum alk... [more]
FOLD_BACSU1.403e-3346.11Bifunctional protein folD OS=Bacillus subtilis GN=... [more]
FOLD_ANAMM1.403e-3347.20Bifunctional protein folD OS=Anaplasma marginale (... [more]
FOLD_ANADF1.403e-3351.33Bifunctional protein folD OS=Anaeromyxobacter sp. ... [more]
FOLD2_ROSDO1.403e-3346.47Bifunctional protein folD 2 OS=Roseobacter denitri... [more]
FOLD_PSEU51.833e-3347.02Bifunctional protein folD OS=Pseudomonas stutzeri ... [more]
FOLD_JANSC1.833e-3346.75Bifunctional protein folD OS=Jannaschia sp. (strai... [more]
FOLD_GRAFK1.833e-3347.65Bifunctional protein folD OS=Gramella forsetii (st... [more]
FOLD_ACIAC1.833e-3348.10Bifunctional protein folD OS=Acidovorax avenae sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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