CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_PSE14 (Bifunctional protein folD 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=folD1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 80/165 (48.48%), Postives = 103/165 (62.42%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   PL  PCTPKG I LL  +GV++ G +AVV+G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   L++G W+KPGA+V+DVG    D           +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+
Sbjct:  127 NVGRLAQR--IPLLRPCTPKGIITLLESTGVDLYGLDAVVVGASNIVGRPMAMELLLAGCTVTVTHRFTKDLAGHVGRADLVVVAAGKPGLIKGEWIKPGAIVIDVGINRQDDG---------KLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CLOCE (Bifunctional protein folD OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=folD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = -1
Query:  172 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT 654
            +N+G L +   +P F+PCTP G +ELL  +G+EI GKN VV+GRSNIVG P ++LL   +ATV+I H+ T N E++   AD+++ A G +  ++  ++KPGAVV+DVG   V    D       +L+GDV + E   +AS IT V GGVGPMT AML+ NT
Sbjct:  125 MNVGKLMIG--KPEFLPCTPAGVVELLEENGIEISGKNCVVVGRSNIVGKPQAILLLAKNATVTICHSKTANIEEVCRSADVLVVAIGKSEFIKPEFVKPGAVVIDVG---VSRGADG------KLVGDVQFAEVAEIASAITKVTGGVGPMTRAMLMKNT 274          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACCN (Bifunctional protein folD OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=folD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +NIG + M G++  F+PCTP G +EL+  + ++I GK+ VVIGRSNIVG P   L    +ATV+  H+ TKN ++++  ADI++ A G   +V   ++K GAVV+DVG   ++           +L GDV +E  + +A  ITPVP GVGPMT+ MLL NT++SAKRA
Sbjct:  125 INIGRM-MTGQDT-FLPCTPHGILELVKETNIDISGKHVVVIGRSNIVGKPVGQLFLNENATVTYCHSKTKNIKELSKLADILVVAVGRPKMVTADYIKEGAVVIDVGVNRLETG---------KLCGDVDFENVLDIAGYITPVPKGVGPMTITMLLHNTVESAKRA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HAEIN (Bifunctional protein folD OS=Haemophilus influenzae GN=folD PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L  R   P    CTP G ++LL  +G+++ GK+AV++G SNIVG P SL L    ATV++ H  TKN E    +ADI++ A G  NL+ G W+K  AVV+DVG   VD           +L+GDV +++A   A+ ITPVPGGVGPMTVAML+SNTL
Sbjct:  127 NVGRLCQR--IPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMSLELLLAGATVTVTHRFTKNLENHVRQADILVVAVGKPNLISGDWIKESAVVIDVGINRVD----------GKLVGDVEFDKAAEKAAYITPVPGGVGPMTVAMLMSNTL 275          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HAEIE (Bifunctional protein folD OS=Haemophilus influenzae (strain PittEE) GN=folD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L  R   P    CTP G ++LL  +G+++ GK+AV++G SNIVG P SL L    ATV++ H  TKN E    +ADI++ A G  NL+ G W+K  AVV+DVG   VD           +L+GDV +++A   A+ ITPVPGGVGPMTVAML+SNTL
Sbjct:  127 NVGRLCQR--IPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMSLELLLAGATVTVTHRFTKNLENHVRQADILVVAVGKPNLISGDWIKESAVVIDVGINRVD----------GKLVGDVEFDKAAEKAAYITPVPGGVGPMTVAMLMSNTL 275          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HAEI8 (Bifunctional protein folD OS=Haemophilus influenzae (strain 86-028NP) GN=folD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L  R   P    CTP G ++LL  +G+++ GK+AV++G SNIVG P SL L    ATV++ H  TKN E    +ADI++ A G  NL+ G W+K  AVV+DVG   VD           +L+GDV +++A   A+ ITPVPGGVGPMTVAML+SNTL
Sbjct:  127 NVGRLCQR--IPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMSLELLLAGATVTVTHRFTKNLENHVRQADILVVAVGKPNLISGDWIKESAVVIDVGINRVD----------GKLVGDVEFDKAAEKAAYITPVPGGVGPMTVAMLMSNTL 275          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DECAR (Bifunctional protein folD OS=Dechloromonas aromatica (strain RCB) GN=folD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 79/169 (46.75%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G LA     P FIPCTP G +++  +  V++ GK AVVIGRSNIVG P +LLL    ATV++ ++ TK+ +  TS ADI++AA G    V G  +KPGAVV+DVG   +            +L GDV +   + +A  ITPVPGGVGPMT+ MLL+NT+++A+R  G
Sbjct:  126 NVGALAQGN--PRFIPCTPYGVMKMFEKGNVDLTGKEAVVIGRSNIVGKPMALLLINAGATVTVCNSRTKDLKFHTSRADILVAAVGKPKFVTGDMVKPGAVVIDVGINRLPDG---------KLCGDVDFASCLEVAGQITPVPGGVGPMTITMLLANTIEAAERKAG 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_SINMW (Bifunctional protein folD 1 OS=Sinorhizobium medicae (strain WSM419) GN=folD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 79/174 (45.40%), Postives = 112/174 (64.37%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA    E   + CTP G +  + R+ G ++ G +AVVIGRSN+ G P   LL   +ATV+  H+ TKN  ++   ADI++AA G   +V+  W+KPGA+V+DVG     ++  P+ E G    +L+GDV ++E   LASVITPVPGGVGPMT+AML++NT+ +A R  G
Sbjct:  125 VNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLSGLSAVVIGRSNLFGKPMGALLLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVG-----INRVPAPERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOFD (Bifunctional protein folD OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=folD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 73/155 (47.10%), Postives = 104/155 (67.10%), Query Frame = -1
Query:  154 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 618
            P F PCTP GC++L+  +G+++ GK+AVVIGRSN VG P +LLL + +ATV++ H+ T++    T +AD+++AA G  N++    +KPGAVV+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NTL++A+R
Sbjct:  139 PGFRPCTPYGCMKLIETTGIDLRGKHAVVIGRSNTVGKPMALLLLQANATVTVCHSATRDIGYHTRQADVIVAAVGKRNVLTADMVKPGAVVIDVGMNRNDEG---------KLCGDVDFAGVKEVAGFITPVPGGVGPMTITMLLVNTLEAAER 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HAEIG (Bifunctional protein folD OS=Haemophilus influenzae (strain PittGG) GN=folD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 77/161 (47.83%), Postives = 103/161 (63.98%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L  R   P    CTP G ++LL  +G+++ GK+AV++G SNIVG P SL L    ATV++ H  TKN E    +ADI++ A G  NL+ G W+K  AVV+DVG   VD           +L+GD+ +++A   A+ ITPVPGGVGPMTVAML+SNTL
Sbjct:  127 NVGRLCQR--IPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMSLELLLAGATVTVTHRFTKNLENHVRQADILVVAVGKPNLISGDWIKESAVVIDVGINRVD----------GKLVGDIEFDKAAEKAAYITPVPGGVGPMTVAMLMSNTL 275          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD1_PSE141.833e-3348.48Bifunctional protein folD 1 OS=Pseudomonas syringa... [more]
FOLD_CLOCE2.393e-3347.20Bifunctional protein folD OS=Clostridium celluloly... [more]
FOLD_BACCN2.393e-3345.24Bifunctional protein folD OS=Bacillus cereus subsp... [more]
FOLD_HAEIN3.126e-3348.45Bifunctional protein folD OS=Haemophilus influenza... [more]
FOLD_HAEIE3.126e-3348.45Bifunctional protein folD OS=Haemophilus influenza... [more]
FOLD_HAEI83.126e-3348.45Bifunctional protein folD OS=Haemophilus influenza... [more]
FOLD_DECAR3.126e-3346.75Bifunctional protein folD OS=Dechloromonas aromati... [more]
FOLD1_SINMW3.126e-3345.40Bifunctional protein folD 1 OS=Sinorhizobium medic... [more]
FOLD_RHOFD4.083e-3347.10Bifunctional protein folD OS=Rhodoferax ferrireduc... [more]
FOLD_HAEIG4.083e-3347.83Bifunctional protein folD OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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