CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRA5 (Bifunctional protein folD OS=Streptococcus agalactiae serotype V GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N G+L   GR P+ +PCTP G +E+     V++ GK+AV+IGRSNIVG P + LL   +ATV++ H+ T+N  ++T EADI+I A G  + V   ++K GAVV+DVG          + +   +L+GDV +E+   +AS+ITPVPGGVGPMT+ MLL  T  +A R+
Sbjct:  125 MNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFVTKDFVKEGAVVIDVGM---------NRDENGKLIGDVVFEQVAEVASMITPVPGGVGPMTITMLLEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRA3 (Bifunctional protein folD OS=Streptococcus agalactiae serotype III GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N G+L   GR P+ +PCTP G +E+     V++ GK+AV+IGRSNIVG P + LL   +ATV++ H+ T+N  ++T EADI+I A G  + V   ++K GAVV+DVG          + +   +L+GDV +E+   +AS+ITPVPGGVGPMT+ MLL  T  +A R+
Sbjct:  125 MNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFVTKDFVKEGAVVIDVGM---------NRDENGKLIGDVVFEQVAEVASMITPVPGGVGPMTITMLLEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRA1 (Bifunctional protein folD OS=Streptococcus agalactiae serotype Ia GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N G+L   GR P+ +PCTP G +E+     V++ GK+AV+IGRSNIVG P + LL   +ATV++ H+ T+N  ++T EADI+I A G  + V   ++K GAVV+DVG          + +   +L+GDV +E+   +AS+ITPVPGGVGPMT+ MLL  T  +A R+
Sbjct:  125 MNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFVTKDFVKEGAVVIDVGM---------NRDENGKLIGDVVFEQVAEVASMITPVPGGVGPMTITMLLEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_OLICO (Bifunctional protein folD OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 78/165 (47.27%), Postives = 101/165 (61.21%), Query Frame = -1
Query:  160 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 654
            +N G LA     P   PCTP GCI L       + G NA+V+GRSN+VG P   LL   +ATV+I H+ T+N   +  +AD+V AA G   +V+G W+KPGA V+DVG     ++  P      RL+GDV Y EAM +A  +TPVPGGVG MTVA LL NT+ +A
Sbjct:  126 VNAGRLA--SGLPALTPCTPLGCIILAKTVHASLEGMNAIVLGRSNLVGRPLVQLLLNENATVTIAHSRTRNLPALCRQADLVFAAVGRPEMVKGDWIKPGATVIDVG-----INRLPGEGGKSRLVGDVAYAEAMEVAGAVTPVPGGVGQMTVACLLVNTVRAA 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MICAN (Bifunctional protein folD OS=Microcystis aeruginosa (strain NIES-843) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LN+G L +RG E     CTP G + LL    + I GK+AVV+GRS +VG P +L+L   +ATV+I H+ T+N  +IT  ADI++ A G ANL+    +KPGAVV+DVG   V            RL+GDV Y   + +AS +TPVPGGVGPMTVAMLL NTL S +R
Sbjct:  129 LNLGGL-VRG-EDCIRSCTPAGVMALLKEYNIPIAGKHAVVVGRSILVGKPLALMLLEENATVTIAHSRTENLAEITRSADILVPAVGKANLITKDMVKPGAVVVDVGINRV----------ADRLVGDVDYAGVLEVASYLTPVPGGVGPMTVAMLLKNTLLSYER 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURCJ (Bifunctional protein folD OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  151 AMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 636
            A+   +PLF PCTP G +++    G+ + G NAVVIGRSNIVG P +++L    ATV+I H+ T++    T EADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NT++SA+RA
Sbjct:  129 ALMTGKPLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGKRNILTADMVKPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLINTIESAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURCH (Bifunctional protein folD OS=Burkholderia cenocepacia (strain HI2424) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  151 AMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 636
            A+   +PLF PCTP G +++    G+ + G NAVVIGRSNIVG P +++L    ATV+I H+ T++    T EADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NT++SA+RA
Sbjct:  129 ALMTGKPLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGKRNILTADMVKPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLINTIESAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURCC (Bifunctional protein folD OS=Burkholderia cenocepacia (strain MC0-3) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  151 AMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 636
            A+   +PLF PCTP G +++    G+ + G NAVVIGRSNIVG P +++L    ATV+I H+ T++    T EADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NT++SA+RA
Sbjct:  129 ALMTGKPLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGKRNILTADMVKPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLINTIESAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRASB (Bifunctional protein folD OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=folD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 78/164 (47.56%), Postives = 102/164 (62.20%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N G L+  G +P   PCTP GCI L       + G NA+VIGRSN+VG P   LL   +ATV+I H+ +++   +T+ AD+V AA G   +V+  W+KPGA V+DVG     ++  P+ E   RL+GDV Y E   +A  ITPVPGGVG MTVA LL NTL +A
Sbjct:  127 NAGRLS--GGQPALAPCTPLGCIILSKTVHPSLEGLNAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRDLAALTARADLVYAAVGRPEMVKRDWIKPGATVIDVG-----INRIPTAEGKTRLVGDVAYAEVAEVAGAITPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_BORPE (Bifunctional protein folD 2 OS=Bordetella pertussis GN=folD2 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 80/163 (49.08%), Postives = 109/163 (66.87%), Query Frame = -1
Query:  151 LAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 639
            L M G+ P F PCTP G ++LL   GV + G  AV++G SNIVG P ++LL    ATV+I ++ T++       AD++I AAG A +V GS +KPGAVV+DVG   ++ S D       RL GDV Y  A ++A  ITPVPGGVGPMT+AMLL+NT+++A+R+
Sbjct:  129 LLMTGK-PQFQPCTPYGVMKLLESEGVSLRGAEAVIVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAGQARRADVLIVAAGRAGIVDGSMIKPGAVVIDVG---INRSPDG------RLCGDVDYGSAAKVAGAITPVPGGVGPMTIAMLLANTVEAAERS 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_STRA51.188e-3245.24Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA31.188e-3245.24Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA11.188e-3245.24Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_OLICO1.188e-3247.27Bifunctional protein folD OS=Oligotropha carboxido... [more]
FOLD_MICAN1.188e-3249.70Bifunctional protein folD OS=Microcystis aeruginos... [more]
FOLD_BURCJ1.188e-3246.91Bifunctional protein folD OS=Burkholderia cepacia ... [more]
FOLD_BURCH1.188e-3246.91Bifunctional protein folD OS=Burkholderia cenocepa... [more]
FOLD_BURCC1.188e-3246.91Bifunctional protein folD OS=Burkholderia cenocepa... [more]
FOLD_BRASB1.188e-3247.56Bifunctional protein folD OS=Bradyrhizobium sp. (s... [more]
FOLD2_BORPE1.188e-3249.08Bifunctional protein folD 2 OS=Bordetella pertussi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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