CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACAH (Bifunctional protein folD OS=Bacillus thuringiensis (strain Al Hakam) GN=folD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 74/168 (44.05%), Postives = 109/168 (64.88%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +++G + M G++  F+PCTP G +EL+  + ++I GK+ VVIGRSNIVG P   L    +ATV+  H+ T+N +++T  ADI+I A G   +V   ++K GAVV+DVG   ++           +L GDV ++  + +A  ITPVP GVGPMT+ MLL NT++SAKRA
Sbjct:  125 ISVGRM-MTGQDT-FLPCTPHGIVELVKETNLDISGKHVVVIGRSNIVGKPVGQLFLNENATVTYCHSKTQNMKELTKLADILIVAVGRPKMVTADYIKEGAVVIDVGVNRLETG---------KLCGDVDFDNVLDVAGYITPVPKGVGPMTITMLLHNTVESAKRA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ALHEH (Bifunctional protein folD OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=folD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 76/166 (45.78%), Postives = 104/166 (62.65%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L +R   P   PCTP G + +L  +G+E+ GK+AV+IG+SNIVG P ++ L     T++I H+ T+N       ADIV+AA G    V G W+KPGAVV+DVG   ++           +L GDV +  A  LA  ITPVPGGVGPMTVA L++NTL +A+
Sbjct:  126 VNMGRLTLR--LPGLRPCTPNGVMTMLAHAGIELEGKDAVIIGQSNIVGRPMAMELLNARCTITICHSRTRNLADRVRAADIVVAAVGRPGFVPGDWIKPGAVVIDVGINRLESG---------KLTGDVDFAAARELAGWITPVPGGVGPMTVATLMANTLAAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_BORPA (Bifunctional protein folD 2 OS=Bordetella parapertussis GN=folD2 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -1
Query:  151 LAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 639
            L M G+ P F PCTP G ++LL   GV + G  AV++G SNIVG P ++LL    ATV+I ++ T++       AD++I AAG A +V GS +KPGAVV+DVG     ++  P      RL GDV Y  A ++A  ITPVPGGVGPMT+AMLL+NT+++A+R+
Sbjct:  129 LLMTGK-PQFQPCTPYGVMKLLESEGVSLRGAEAVIVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAGQARRADVLIVAAGRAGIVDGSMIKPGAVVIDVG-----INRGPD----GRLCGDVDYGSAAKVAGAITPVPGGVGPMTIAMLLANTVEAAERS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_PSEPK (Bifunctional protein folD 1 OS=Pseudomonas putida (strain KT2440) GN=folD1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 78/168 (46.43%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            LN+G LA  G E    PCTP G + L+     +I G  A+V+G SN+VG P + LL +   TVSI H  T +  +   EADI++ A GV  L+RG ++KPGA V+DVG   V +          +L GDV +EEA+ +A  ITPVPGGVGPMT+A LL+NTL +A+ A
Sbjct:  126 LNVGRLAA-GLEGGLTPCTPLGVMRLIRSVHPDIAGMGALVVGASNVVGRPLARLLLQADCTVSIAHIRTTDLARRCREADILVVATGVPGLIRGDYIKPGATVIDVGISRVRLPNGRD-----KLTGDVAFEEAVEVAGAITPVPGGVGPMTIAYLLANTLQAARAA 287          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SILST (Bifunctional protein folD OS=Silicibacter sp. (strain TM1040) GN=folD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.456e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  151 NIGNLAMRGR-EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            +I N+ + G  +   +PCTP GC+ +L      + G +AVVIGRSNIVG P + LL     TV+I H+ TK+  ++   ADIV+AA G   +V G W+K GA V+DVG   +D       E   RL+GDV YE A   A  ITPVPGGVGPMT+A LL+NT+ +  RA
Sbjct:  124 HISNVGLLGTGQKSMVPCTPLGCLMMLRDYHGSLSGLDAVVIGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLPEVVRRADIVVAAVGRPEMVPGDWIKEGATVIDVGINRID--APEKGEGKTRLVGDVHYESAAARAGAITPVPGGVGPMTIACLLANTVTACCRA 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PORGI (Bifunctional protein folD OS=Porphyromonas gingivalis GN=folD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.456e-32
Identity = 82/173 (47.40%), Postives = 109/173 (63.01%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTS-LLLQRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+G L++    P F+  TPKG +ELL R  +   GK+ VV+GRSNIVG P S LLLQ+      T++I H+ T N +++   ADI+IAA G    +    +KPGAVV+DVGT  V  S   S   G+RL GDV ++E     S ITPVPGGVGPMT+  L+SNTL ++K  Y
Sbjct:  128 INVGRLSIG--LPGFVSATPKGIVELLRRYNIPTRGKHCVVLGRSNIVGKPVSQLLLQKGEPGDCTITICHSRTPNIKEVCLTADIIIAALGQPEFLTADMVKPGAVVVDVGTTLVPDSTRKS---GFRLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMSNTLLASKGLY 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MARAV (Bifunctional protein folD OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=folD PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.456e-32
Identity = 76/164 (46.34%), Postives = 99/164 (60.37%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            NIG L  R  +P   PCTP G I LL   G    G++AV++G SNIVG P S+ L    AT ++ H  T N E+   EADI++AA G   +++G W+KPGA V+DVG   +D           +L GDV ++ A   A+ ITPVPGGVGPMT+A LL NTL +A
Sbjct:  127 NIGRLMQR--KPTLRPCTPAGVITLLDSIGTPYKGQHAVIVGASNIVGRPMSMELLLKGATTTVCHRFTDNLEKFVGEADILVAAVGKPGIIKGEWVKPGATVIDVGINRMDDG---------KLCGDVDFDAAAERAAYITPVPGGVGPMTIATLLENTLYAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ACICJ (Bifunctional protein folD OS=Acidiphilium cryptum (strain JF-5) GN=folD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.456e-32
Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+  LA+    P  +PCTP+G ++LL  +G+   G  A+V+GRSNIVG P + LL    ATV+I H+ T++       A+I+IAA G A +VRG W+ PGA V+DVG       ++ +   G  L+GDV Y EA  +A  ITPVPGGVGPMT+A LL NTL +A
Sbjct:  123 NVAALALG--TPFLVPCTPRGVMKLLAAAGIAPRGARALVLGRSNIVGRPMAALLLAADATVTIAHSRTRDLAAECRRAEILIAAVGRAEMVRGDWVSPGATVIDVG-------INRTAAGG--LVGDVAYAEAAAVAGAITPVPGGVGPMTIACLLENTLIAA 275          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_THETN (Bifunctional protein folD OS=Thermoanaerobacter tengcongensis GN=folD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 72/157 (45.86%), Postives = 103/157 (65.61%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +PLF+PCTPK  I +L  +GV++ GK+AVVIGRSNI+G P + LL   + TV++ H+ TK+    T +AD+++ AAG  NLVRG  +K G V++D G     ++V        ++ GD  +E     AS +TPVPGGVGP+T AM+L NTL++ K A
Sbjct:  130 KPLFVPCTPKAIIHILENTGVDLEGKHAVVIGRSNILGKPVAKLLLDKNCTVTVCHSKTKDLAYHTKQADVLVVAAGKMNLVRGDMVKEGVVLIDAG-----INVHEG-----KIYGDADFESIKDKASYVTPVPGGVGPVTTAMILKNTLEAFKYA 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RALPJ (Bifunctional protein folD OS=Ralstonia pickettii (strain 12J) GN=folD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = -1
Query:  151 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 618
            PLF PCTP GC+++L      + G NAVV+G SNIVG P ++LL +  AT++I ++ T++    T EADI++AA G  N++    +KPGAVV+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NTL++A+RA
Sbjct:  135 PLFRPCTPYGCMKMLESINYPVRGANAVVVGASNIVGKPMAMLLLQSGATITICNSKTRDLAAHTREADIIVAAVGRRNIITADMVKPGAVVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLINTLEAAERA 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BACAH2.646e-3244.05Bifunctional protein folD OS=Bacillus thuringiensi... [more]
FOLD_ALHEH2.646e-3245.78Bifunctional protein folD OS=Alkalilimnicola ehrli... [more]
FOLD2_BORPA2.646e-3248.47Bifunctional protein folD 2 OS=Bordetella parapert... [more]
FOLD1_PSEPK2.646e-3246.43Bifunctional protein folD 1 OS=Pseudomonas putida ... [more]
FOLD_SILST3.456e-3246.43Bifunctional protein folD OS=Silicibacter sp. (str... [more]
FOLD_PORGI3.456e-3247.40Bifunctional protein folD OS=Porphyromonas gingiva... [more]
FOLD_MARAV3.456e-3246.34Bifunctional protein folD OS=Marinobacter aquaeole... [more]
FOLD_ACICJ3.456e-3246.95Bifunctional protein folD OS=Acidiphilium cryptum ... [more]
FOLD_THETN4.514e-3245.86Bifunctional protein folD OS=Thermoanaerobacter te... [more]
FOLD_RALPJ4.514e-3246.79Bifunctional protein folD OS=Ralstonia pickettii (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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