CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURPP (Bifunctional protein folD OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=folD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N G L M GR PLF PCTP G +++L    + + G NAVVIGRSNIVG P +LLL    ATV+I H+ T++    T  AD+V+AA G+ N++    +KPGA V+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NT+++A+R
Sbjct:  126 NAGAL-MTGR-PLFRPCTPYGVMKMLAAYEIPLQGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRDLAAHTRNADVVVAATGLRNILTAEMVKPGAAVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAER 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BARQU (Bifunctional protein folD OS=Bartonella quintana GN=folD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 75/171 (43.86%), Postives = 110/171 (64.33%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +NIG L+    E   IPCTP G + ++ +  G ++ G +AVV+GRSNIVG P + LL   +ATV+I H+ T++ + +   ADI++AA G   +++  W+K GA+V+DVG   ++    P    G  RL+GDV +E      + ITPVPGGVGPMT+AML+ NTL++A R Y
Sbjct:  125 INIGKLSCNTLEDAIIPCTPAGAMIMIEQQCGRDLSGLDAVVVGRSNIVGKPMAALLTAANATVTIAHSRTRDLDDVCRSADILVAAVGRPQIIKKDWVKNGAIVIDVG---INRIAAPEKGIGKTRLVGDVDFEAIKGKTAAITPVPGGVGPMTIAMLMVNTLNAAARLY 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_MYXXD (Bifunctional protein folD 2 OS=Myxococcus xanthus (strain DK 1622) GN=folD2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 83/170 (48.82%), Postives = 110/170 (64.71%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            LN GNL + GR      CTP G + LL   G +  GK AVV+GRSNIVG P +L+L + +ATV+I H+ +    ++   ADI++ A G A LV+G+W+KPGAVV+DVG          + +   +L+GDV +  A   AS ITPVPGGVGPMT+AML+ NTLD+A R YG
Sbjct:  126 LNAGNLLL-GRSTTRA-CTPYGVMRLLEEIGCDPAGKRAVVVGRSNIVGKPMALMLLQKNATVTICHSKSDLRREVEG-ADILVVAVGAAELVKGAWIKPGAVVIDVGM---------NRKPDGKLVGDVEFAAAAERASFITPVPGGVGPMTIAMLMRNTLDAAVR-YG 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_MYXXD (Bifunctional protein folD 1 OS=Myxococcus xanthus (strain DK 1622) GN=folD1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = -1
Query:  154 LAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 639
            LA  G    F+PCTP G +E+L R  +   GK+ V++GRS IV  P + LL      ATV+I H  T +    T +ADI+I A G  NL+    +KPG VV+DVG   V    D S   GYR++GDV ++    +AS ITPVPGGVGPMT+ MLL+NTL +A++
Sbjct:  128 LAFVGDPRAFVPCTPAGIMEMLRREDIPTRGKHVVIVGRSLIVSKPLASLLMAPGPDATVTITHRHTPDLASFTRQADILIVAVGKQNLITADMVKPGVVVIDVGQNRVS---DASSPRGYRMVGDVDFDAIQPIASAITPVPGGVGPMTITMLLANTLQAARQ 288          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_WOLTR (Bifunctional protein folD OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 73/164 (44.51%), Postives = 104/164 (63.41%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G L ++G +   +PCTPKG + L+      + GKNAVVIGRSNIVG P   LL + + TV+I+H+ +K+  +  S+AD+V+ A G  N V+  W+K GA+V+DVG   V      S E   +L+GDV ++        ITPVPGGVGPMT+A L+ NT+ +A
Sbjct:  126 NVGKL-VKGEKNCLVPCTPKGALHLIKLVETNLSGKNAVVIGRSNIVGKPMFHLLLQENCTVTILHSQSKDLAEYCSKADVVVTAVGKPNFVQEGWIKEGAIVIDVGINSV------SIEGKTKLIGDVDFDRVKEKTKAITPVPGGVGPMTIAFLMINTVIAA 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_THISH (Bifunctional protein folD OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/169 (46.15%), Postives = 102/169 (60.36%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G LA+R   P   PCTP G + LL  +G    G+NAVV+G SNIVG P +L L    ATV++ H  T +  +  + ADIV+ A G  +LV G W+KPGA V+DVG   ++           RL+GDV +  A   A+ ITPVPGGVGPMTVAML+ NT+ S +   G
Sbjct:  127 NVGRLAVR--LPTLRPCTPYGVMRLLDSTGEVYKGRNAVVVGASNIVGRPMALELMLAGATVTVCHRFTTDTAEHVARADIVVVAVGRPDLVPGEWIKPGATVIDVGMNRLEDG---------RLVGDVSFAAAAERAAWITPVPGGVGPMTVAMLMKNTIQSYESRLG 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRPN (Bifunctional protein folD OS=Streptococcus pneumoniae GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LN+G L      P+ IP TP G +E+    G+++ GKNAVVIGRSNIVG P + LL   +ATV++ H+ T N  ++ ++ADI++ A G A  V   ++KPGAVV+DVG          + +   +L GDV YE    LAS ITPVPGGVGPMT+ ML+  T  +A R
Sbjct:  125 LNMGRLW--SGHPVMIPSTPAGIMEMFHEYGIDLEGKNAVVIGRSNIVGKPMAQLLLAKNATVTLTHSRTHNLSKVAAKADILVVAIGRAKFVTADFVKPGAVVIDVGM---------NRDENGKLCGDVDYEAVAPLASHITPVPGGVGPMTITMLMEQTYQAALR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEPW (Bifunctional protein folD OS=Pseudomonas putida (strain W619) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G NAV++G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG          + +   +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--IPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMAMELLLAGCTVTVCHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWVKEGAIVIDVGI---------NRQEDGKLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAEELH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEP1 (Bifunctional protein folD OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=folD PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G NAV++G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG          + +   +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--IPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMAMELLLAGCTVTVCHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWVKEGAIVIDVGI---------NRQEDGKLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAEELH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEF5 (Bifunctional protein folD OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/165 (47.27%), Postives = 101/165 (61.21%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   PL  PCTPKG + LL  +G ++ G +AVV+G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG    D           +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+
Sbjct:  127 NVGRLAQR--IPLLRPCTPKGIMTLLESTGADLYGMDAVVVGASNIVGRPMAMELLLAGCTVTVTHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQDDG---------KLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAE 280          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BURPP4.514e-3247.59Bifunctional protein folD OS=Burkholderia phytofir... [more]
FOLD_BARQU4.514e-3243.86Bifunctional protein folD OS=Bartonella quintana G... [more]
FOLD2_MYXXD4.514e-3248.82Bifunctional protein folD 2 OS=Myxococcus xanthus ... [more]
FOLD1_MYXXD4.514e-3246.34Bifunctional protein folD 1 OS=Myxococcus xanthus ... [more]
FOLD_WOLTR5.895e-3244.51Bifunctional protein folD OS=Wolbachia sp. subsp. ... [more]
FOLD_THISH5.895e-3246.15Bifunctional protein folD OS=Thioalkalivibrio sp. ... [more]
FOLD_STRPN5.895e-3246.11Bifunctional protein folD OS=Streptococcus pneumon... [more]
FOLD_PSEPW5.895e-3246.43Bifunctional protein folD OS=Pseudomonas putida (s... [more]
FOLD_PSEP15.895e-3246.43Bifunctional protein folD OS=Pseudomonas putida (s... [more]
FOLD_PSEF55.895e-3247.27Bifunctional protein folD OS=Pseudomonas fluoresce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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