CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEE4 (Bifunctional protein folD OS=Pseudomonas entomophila (strain L48) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G NAV++G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG          + +   +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--IPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMAMELLLAGCTVTVCHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWVKEGAIVIDVGI---------NRQEDGKLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAEELH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSA (Bifunctional protein folD OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 75/169 (44.38%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+G LA  G     +PCTP G + LL  +  ++ G +AVVIGRSNIVG P + LL +   TV++ H+ TK+   +   ADIVIAA G   +++G W+KPGA V+DVG   +++      +   +L+GDV +  A+++A  ITPVPGGVGPMT+A LL NTL +  R +
Sbjct:  127 VNVGRLAAGG--DALVPCTPLGSLLLLKDTLGKLGGLDAVVIGRSNIVGKPMAQLLIKESCTVTVAHSQTKDLPGVVRRADIVIAAVGRPEMIKGDWIKPGATVIDVGINRIELP-----DGTKKLVGDVDFASAVKVAGAITPVPGGVGPMTIACLLRNTLVACARLH 288          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CAMJD (Bifunctional protein folD OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 75/166 (45.18%), Postives = 107/166 (64.46%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L + G E  F+PCTP G ++LL    +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD++I AAG  NL+R   +K G +V+DVG   ++           +++GDV +EE  + +S ITPVP GVGPMT+AMLL NT+ SAK
Sbjct:  123 INVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLKGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPCGVGPMTIAMLLENTVKSAK 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BART1 (Bifunctional protein folD OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 74/173 (42.77%), Postives = 110/173 (63.58%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY---RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+G LA    E   IPCTP G + ++ +  G ++ G +AVV+GRSNIVG P + LL   +ATV+I H+ T++ + +   ADI++AA G   +++  W+K  A+V+DVG     ++  P+ E G     L+GDV +E     A+ ITPVPGGVGPMT+AML+ NTL +A R +
Sbjct:  125 VNVGKLAANALEDAIIPCTPAGAMMMIEQHCGRDLSGLDAVVVGRSNIVGKPMAALLTAANATVTIAHSRTRDLDDVCRSADILVAAVGRPQMIKKDWIKKDAIVIDVG-----INRIPAPEKGVGKTHLIGDVDFENVKEKAAAITPVPGGVGPMTIAMLMVNTLKAAARLH 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACC2 (Bifunctional protein folD OS=Bacillus cereus (strain G9842) GN=folD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 72/168 (42.86%), Postives = 109/168 (64.88%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +++G + M G++  F+PCTP G +EL+  + ++I GK+ VVIGRSNIVG P   L    +ATV+  H+ T+N ++++  ADI+I A G   ++   ++K GAVV+DVG   ++           +L GDV ++  + +A  ITPVP GVGPMT+ MLL NT++SAKRA
Sbjct:  125 ISVGRM-MTGQDT-FLPCTPHGIVELVKETNLDISGKHVVVIGRSNIVGKPVGQLFLNENATVTYCHSKTQNMKELSKLADILIVAVGRPKMITADYIKEGAVVIDVGVNRLETG---------KLCGDVDFDNVLNVAGYITPVPKGVGPMTITMLLHNTVESAKRA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_PSEPK (Bifunctional protein folD 2 OS=Pseudomonas putida (strain KT2440) GN=folD2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G NAV++G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG          + +   +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  127 NIGRLAQR--IPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMAMELLLAGCTVTVCHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWVKEGAIVIDVGI---------NRQEDGKLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAEELH 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_PSEPG (Bifunctional protein folD 1 OS=Pseudomonas putida (strain GB-1) GN=folD1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            NIG LA R   PL  PCTPKG + LL  +G ++ G NAV++G SNIVG P ++ L     TV++ H  TK+       AD+V+ AAG   LV+G W+K GA+V+DVG          + +   +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+  +
Sbjct:  133 NIGRLAQR--IPLLRPCTPKGIMTLLESTGQDLYGMNAVIVGASNIVGRPMAMELLLAGCTVTVCHRFTKDLAGHVGRADLVVVAAGKPGLVKGEWVKEGAIVIDVGI---------NRQEDGKLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAEELH 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_WOLPP (Bifunctional protein folD OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=folD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.699e-32
Identity = 73/164 (44.51%), Postives = 104/164 (63.41%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G L ++G +   IPCTPKG + L+      + GKNAV+IGRSNIVG P   LL + + TV+I+H+ +++     S+ADIV+AA G  N V+  W+K GA+V+DVG   +++          +L+GDV +E        ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  126 NVGRL-VKGEKNCLIPCTPKGSLHLIKSVENNLSGKNAVIIGRSNIVGKPMFHLLLQENCTVTILHSQSRDLADYCSKADIVVAAVGKPNFVQPDWIKKGAIVIDVGINSINIGNQS------KLVGDVDFEGVKEKVKAITPVPGGVGPMTIAFLMINTLVAA 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBPA (Bifunctional protein folD OS=Vibrio parahaemolyticus GN=folD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.699e-32
Identity = 77/161 (47.83%), Postives = 98/161 (60.87%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA R   P    CTPKG I LL R  +E+ GK+AVV+G SNIVG P +L L     T +  H  TK+ E    +AD+V+ A G  N + G W+K GAVV+DVG   +D           +L+GDV Y++A   AS ITPVPGGVGPMTVA L+ NT+
Sbjct:  127 NVGRLAQR--IPKLRSCTPKGIITLLDRYNIELRGKHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLESHVRQADVVVVAVGKPNFIPGEWIKKGAVVVDVGINRLDSG---------KLVGDVEYDKARESASFITPVPGGVGPMTVASLIENTM 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_THET8 (Bifunctional protein folD OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=folD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.699e-32
Identity = 75/165 (45.45%), Postives = 105/165 (63.64%), Query Frame = -1
Query:  160 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 654
            LN+G L   G+     PCTP G + LL   GV++ GK  VV+GRSNIVG P + LL R  ATV++ H+ T++  ++T  A +++ A G  +LVR  W++ GA+V+DVG   V+           RL+GDV + E   +A  +TPVPGGVGPMTVAML+ NTL++A
Sbjct:  122 LNVGRLWSGGKG--LFPCTPLGVVRLLKHYGVDLRGKEVVVVGRSNIVGKPLAGLLLREDATVTLAHSKTQDLPEVTRRAQVLVVAVGRPHLVRKEWVREGAIVVDVGVNRVE----------GRLLGDV-HPEVAEVAFALTPVPGGVGPMTVAMLMGNTLEAA 273          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_PSEE45.895e-3246.43Bifunctional protein folD OS=Pseudomonas entomophi... [more]
FOLD_MAGSA5.895e-3244.38Bifunctional protein folD OS=Magnetospirillum magn... [more]
FOLD_CAMJD5.895e-3245.18Bifunctional protein folD OS=Campylobacter jejuni ... [more]
FOLD_BART15.895e-3242.77Bifunctional protein folD OS=Bartonella tribocorum... [more]
FOLD_BACC25.895e-3242.86Bifunctional protein folD OS=Bacillus cereus (stra... [more]
FOLD2_PSEPK5.895e-3246.43Bifunctional protein folD 2 OS=Pseudomonas putida ... [more]
FOLD1_PSEPG5.895e-3246.43Bifunctional protein folD 1 OS=Pseudomonas putida ... [more]
FOLD_WOLPP7.699e-3244.51Bifunctional protein folD OS=Wolbachia pipientis s... [more]
FOLD_VIBPA7.699e-3247.83Bifunctional protein folD OS=Vibrio parahaemolytic... [more]
FOLD_THET87.699e-3245.45Bifunctional protein folD OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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