CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LAWIP (Bifunctional protein folD OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=folD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36
Identity = 84/169 (49.70%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  160 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 654
            +N+G L + G    F+PCTP G  ELLIRS VE +G   VVIGRSNIVG P S++L +      ATV++VH  +KN  +   +ADIVIAA GV N V+  W+KPGA V+DVG   +  + D        L GDV +    ++A  ITPVPGGVGPMT+AML+ NT+ SA
Sbjct:  126 MNLGRLVIGGNAITFLPCTPAGIQELLIRSSVETLGAEVVVIGRSNIVGRPISIMLTQKGVGGDATVTLVHTKSKNIVRHCQQADIVIAAVGVPNFVKAEWIKPGATVIDVGVNRIGFNEDTGKPI---LSGDVDFVNVSQVAGKITPVPGGVGPMTIAMLMRNTVRSA 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PELPD (Bifunctional protein folD OS=Pelobacter propionicus (strain DSM 2379) GN=folD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.356e-36
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L++   +P+F PCTP G + +L  +GVE+ GK  VV+GRSNIVG P +++    HATV++ H+ T++   +   AD+VIAA G   +++G W+K GAVV+DVG   V            +L+GDV +  A + AS ITPVPGGVGPMT+ MLL NTL+SAKR
Sbjct:  125 NVGRLSVG--KPVFQPCTPYGVMVMLREAGVELKGKEVVVVGRSNIVGKPVAMMCLAEHATVTLCHSRTRDLPDVVRRADVVIAAVGRPEMIKGDWIKEGAVVIDVGINRVGEK---------KLVGDVEFAGASQRASAITPVPGGVGPMTITMLLQNTLESAKR 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_GEOMG (Bifunctional protein folD 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=folD2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.356e-36
Identity = 80/166 (48.19%), Postives = 110/166 (66.27%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L +   +P F PCTP G + +L  +GV++ GK  VV+GRSNIVG P +L+  + HATV+I H+ T++      EAD+VIAA GV  +++G W+K GAVV+DVG   V            +L+GDV +  A + AS ITPVPGGVGPMT+ MLL NTL++AK+
Sbjct:  125 NVGRLMVG--KPTFQPCTPYGVMVMLREAGVDLAGKEVVVVGRSNIVGKPVALMCLQQHATVTICHSKTRDLPSKVKEADVVIAAVGVPEMIKGEWIKEGAVVIDVGVNRVGEK---------KLVGDVEFAAASQRASAITPVPGGVGPMTITMLLYNTLEAAKK 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PELLD (Bifunctional protein folD OS=Pelodictyon luteolum (strain DSM 273) GN=folD PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.771e-36
Identity = 85/173 (49.13%), Postives = 112/173 (64.74%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL----LQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L M   +  F+ CTP G +EL+ R G+E  GK+ VVIGRSNIVG P + L    L+  + TV++ H+ TK+    T +ADI+IAA G A  V    +K GAVV+DVG   ++   DP+ + G RL+GDV YE     A+ +TPVPGGVGPMT+AMLL NTL S +RA G
Sbjct:  125 NLGRLVMGHLDKCFVSCTPYGILELIGRYGIETSGKHCVVIGRSNIVGKPMANLMMQKLKESNCTVTVCHSATKDIASYTRQADILIAAIGRAKFVTADMVKQGAVVIDVGINRIE---DPTTKSGTRLVGDVDYEGVSAKAAAMTPVPGGVGPMTIAMLLKNTLHSFERANG 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SYNFM (Bifunctional protein folD OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=folD PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 80/171 (46.78%), Postives = 115/171 (67.25%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM-GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L +   EP ++PCTP G  ELL+RSG ++ G    ++GRSNIVG P +++L +     +AT+++ H  TK+    T  ADI+I AAGVA  V+G+ +KPGAVV+DVG   V  + D     G R++ GDV ++EA+ +AS ITPVPGGVGPMT+ ML+ NT+ + K
Sbjct:  126 VNVGKLMIG--EPDYLPCTPAGIQELLVRSGTQVSGAEVTIVGRSNIVGKPIAMMLVQKANGANATITVCHTRTKDVASHTRRADILIVAAGVAEYVKGNMIKPGAVVIDVGVNEVGKTAD-----GKRILKGDVAFDEAVEVASAITPVPGGVGPMTITMLMKNTVRACK 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NATTJ (Bifunctional protein folD OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=folD PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 82/167 (49.10%), Postives = 112/167 (67.07%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+GNL +  +   F PCTP G ++LL     ++ GK+AVV+GRSNIVG P SLLL   +ATVSI H+ TK+  ++T  AD++I A G   +V G  +KPGAVV+DVG   VD           +L+GDV +E A  +A  ITPVPGGVGPMT+ MLL+NT+++A+R
Sbjct:  125 VNVGNLTIGQKR--FTPCTPAGIMKLLDSIDYDLNGKHAVVLGRSNIVGKPISLLLLERNATVSICHSRTKDLTEMTKSADLLIVAVGRPEIVTGKMIKPGAVVIDVGVNKVD----------DKLIGDVEFESAKEVAGWITPVPGGVGPMTITMLLNNTIEAARR 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_RHILO (Bifunctional protein folD 1 OS=Rhizobium loti GN=folD1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 84/174 (48.28%), Postives = 113/174 (64.94%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     +  F+PCTP G + L+ R  G ++ G NAVV+GRSNIVG P + LL   + TV+I H+ TK+   +   ADI++AA G   +++G W+KPGA V+DVG     ++  P+ E G    RL+GDV Y EA R A  ITPVPGGVGPMT+AML++NTL SA  A G
Sbjct:  125 INVGKLGTGELDTAFVPCTPAGSMLLIQRVRGKDLSGLNAVVVGRSNIVGKPMANLLLAANCTVTIAHSRTKDLPALARTADILVAAVGRPEMIKGDWVKPGATVIDVG-----INRIPAPEKGEGKSRLVGDVAYAEAARQAGAITPVPGGVGPMTIAMLMANTLASAYLAAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACP2 (Bifunctional protein folD OS=Bacillus pumilus (strain SAFR-032) GN=folD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.945e-36
Identity = 81/167 (48.50%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LNIG + +   E  F+PCTP G +ELL ++GV + GK  VV+GRSNIVG P   LL   +ATV+  H+ T N  + T +ADI++ A G AN ++   +K GA+V+DVG   +D           +L+GDV +EEA   AS ITPVPGGVGPMT+ ML  NT+ SAKR
Sbjct:  125 LNIGKMLLG--EDTFLPCTPAGIVELLNKTGVNLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTANISEHTLKADILVVAVGRANFIKADQIKEGAIVIDVGVNRLDTG---------KLVGDVDFEEAKEKASYITPVPGGVGPMTITMLAHNTVKSAKR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NOVAD (Bifunctional protein folD OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA+   +P F+PCTP GC+ LL     ++ G +AVVIGRSNIVG P + LL     TV++ H+ TKN  ++   ADIV+AA G   +V+G W+KPGA V+DVG     ++  P  E G  RL+GDV Y  A  +AS ITPVPGGVGPMT+A+LL N L +A R  G
Sbjct:  126 INAGRLAVG--QPGFVPCTPLGCLMLLKDRLGDLSGLDAVVIGRSNIVGKPMAQLLIAESCTVTVAHSRTKNLPEVVRRADIVVAAVGRPEMVKGDWIKPGATVIDVG-----INRVPGKEEGKTRLVGDVDYASAAEVASAITPVPGGVGPMTIAVLLRNALVAAYRNAG 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GEOSF (Bifunctional protein folD OS=Geobacter sp. (strain FRC-32) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 80/166 (48.19%), Postives = 110/166 (66.27%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L +   +PLF PCTP G + +L  +GV++ GK  VV+GRSNIVG P + +  + +ATV++ H+ T++     + AD+VIAA G   +++G+W+K GAVV+DVG   V            +L+GDV YE A   AS ITPVPGGVGPMT+ MLL NTL+SAKR
Sbjct:  125 NVGRLVIG--KPLFQPCTPYGVMVMLKETGVDLAGKEVVVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVAMADVVIAAVGQPEMIKGAWIKKGAVVIDVGVNRVGEK---------KLVGDVEYEAASARASAITPVPGGVGPMTITMLLYNTLESAKR 279          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_LAWIP1.038e-3649.70Bifunctional protein folD OS=Lawsonia intracellula... [more]
FOLD_PELPD1.356e-3647.59Bifunctional protein folD OS=Pelobacter propionicu... [more]
FOLD2_GEOMG1.356e-3648.19Bifunctional protein folD 2 OS=Geobacter metallire... [more]
FOLD_PELLD1.771e-3649.13Bifunctional protein folD OS=Pelodictyon luteolum ... [more]
FOLD_SYNFM3.021e-3646.78Bifunctional protein folD OS=Syntrophobacter fumar... [more]
FOLD_NATTJ3.021e-3649.10Bifunctional protein folD OS=Natranaerobius thermo... [more]
FOLD1_RHILO3.021e-3648.28Bifunctional protein folD 1 OS=Rhizobium loti GN=f... [more]
FOLD_BACP23.945e-3648.50Bifunctional protein folD OS=Bacillus pumilus (str... [more]
FOLD_NOVAD5.153e-3649.71Bifunctional protein folD OS=Novosphingobium aroma... [more]
FOLD_GEOSF5.153e-3648.19Bifunctional protein folD OS=Geobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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