CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HERA2 (Bifunctional protein folD OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=folD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.513e-31
Identity = 80/165 (48.48%), Postives = 103/165 (62.42%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N G LA +G   L +P TP G + LL R  + + GK+AVV+GRSN+VG P + LL   HATV+I H+ T N  ++  + DIV AA G A LV G  LKPGAVVLD G   V            +++GDV +E A ++AS ITPVPGG GP+T  MLL NTL +A+
Sbjct:  127 NAGRLA-QGLTAL-VPNTPAGGMALLDRYQINLAGKHAVVVGRSNVVGKPLAQLLLARHATVTICHSRTANLAEVIRQGDIVAAAVGKAGLVTGEMLKPGAVVLDFGINEVAEG---------QVVGDVDWESASKVASAITPVPGGTGPVTNMMLLQNTLQAAQ 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ERWCT (Bifunctional protein folD OS=Erwinia carotovora subsp. atroseptica GN=folD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.513e-31
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G L  R   PL   CTP+G I LL R  ++  G NAVV+G SNIVG P SL L     T ++ H  TKN       AD+++ A G    + G W+KPGA+VLDVG   ++           +++GD+ +E A   AS I+PVPGGVGPMTVA L+ NTL + +
Sbjct:  127 NVGRLCQRA--PLLRACTPRGIITLLERYNIDTFGLNAVVVGASNIVGRPMSLELLLAGCTTTVTHRFTKNLRHHIENADLLVVAVGKPGFIPGEWIKPGAIVLDVGINRLESG---------KVVGDIEFETAQERASYISPVPGGVGPMTVATLIQNTLQACE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DELAS (Bifunctional protein folD OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=folD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.513e-31
Identity = 74/157 (47.13%), Postives = 103/157 (65.61%), Query Frame = -1
Query:  145 FIPCTPKGCIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 612
            F  CTP GC+++L   G+ ++ GK+AVVIGRSNIVG P +++L   +ATV+I H+ T +   +T +ADIV+AA G  N++     KPGAVV+DVG    D           +L GDV ++    +A  ITPVPGGVGPMT+ MLL NT+++A+RA G
Sbjct:  137 FKACTPYGCMKMLESIGMKDLRGKHAVVIGRSNIVGKPMAMMLLAANATVTICHSGTADLAAMTRQADIVVAAVGKRNVLTADMCKPGAVVIDVGMNRNDEG---------KLCGDVDFDGVKEVAGFITPVPGGVGPMTITMLLVNTMEAAERAAG 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_RUBXD (Bifunctional protein folD 1 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=folD1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.513e-31
Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = -1
Query:  157 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 618
            P  +PCTP G I+LL RSGV + G+ AVV+GRSN+VG P +LLL R +ATV++ H+ T++   +T  A++++ AAG   +V    ++ GAVV+DVG    +            L GDV  EE    A+ +TPVPGGVGPMT AMLL NTL++A+
Sbjct:  134 PSLLPCTPHGVIQLLRRSGVGLEGREAVVVGRSNLVGKPLALLLLRENATVTVCHSRTRDLAGVTRRAEVLVVAAGRRGMVGAEHVREGAVVVDVGIHRAEDG---------GLTGDVRQEEVAARAAALTPVPGGVGPMTRAMLLYNTLEAAR 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBSL (Bifunctional protein folD OS=Vibrio splendidus (strain LGP32) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA R   P    CTPKG I LL R  +++ GK+AVV+G SNIVG P +L L     T +  H  TK+ E    +AD+V+ A G  N + G+W+K GAVV+DVG   ++           +L+GDV Y+ A   AS ITPVPGGVGPMTVA L+ NT+
Sbjct:  127 NVGRLAQR--MPKLRSCTPKGIITLLDRYNIDLRGKHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVVVVAVGKPNFIPGAWIKKGAVVVDVGINRLESG---------KLVGDVEYDVAKESASFITPVPGGVGPMTVASLIENTM 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SYNY3 (Bifunctional protein folD OS=Synechocystis sp. (strain PCC 6803) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G+L +RG E L   CTP G + LL    +++ GKNAVV+GRS +VG P +L+L   + TV+I H+ T+N   IT +ADI++AA G    V    +KPGA+V+DVG   +D+    S      L+GDV +     +AS +TPVPGG+GPMTV +LL+NT+ S ++  G
Sbjct:  131 VNLGHL-VRGEEGLR-SCTPAGVMALLAEYNLDLTGKNAVVLGRSILVGKPLALMLLEKNCTVTIAHSRTQNLADITRQADILVAAIGKPEFVTADMVKPGAIVVDVGINRLDLGEGKS-----TLVGDVDFAGVAPVASYLTPVPGGIGPMTVTLLLANTVASYRQRLG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SOLUE (Bifunctional protein folD OS=Solibacter usitatus (strain Ellin6076) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 75/166 (45.18%), Postives = 102/166 (61.45%), Query Frame = -1
Query:  145 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEY-------------GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 603
            CTP G +ELL R G+ I G+ AVV+GRS+IVG P ++LL   HATV+I H+ T + + +  EADI++AA G A ++ G ++KPGA V+DVGT  V      +  Y             G  L+GDV     +  A   TPVPGGVGP+T+AML+ NT+ SA+R  G
Sbjct:  139 CTPAGIMELLKRGGIPIAGQRAVVVGRSDIVGKPVAMLLLHEHATVTICHSKTPDLKSLCREADILVAAIGRAAMITGEFIKPGATVIDVGTNHVADREKAARIYRNSPEKMANFDKRGNLLIGDVDPVGVVEKAGAYTPVPGGVGPLTIAMLMVNTVASAERRAG 304          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB9 (Bifunctional protein folD OS=Shewanella baltica (strain OS195) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G LA R   P+   CTP G + L+  +GV+  G +AVV+G SNIVG P +L L     T +  H  TKN EQ    AD+V+ A G    + G W+KPGA+V+DVG   +D            L+GDV Y+ A + AS ITPVPGGVGPMT+A LL NTL +A++
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGKPGFIPGEWIKPGAIVIDVGINRLDNGT---------LVGDVQYDVAAQNASFITPVPGGVGPMTIASLLENTLYAAEQ 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB8 (Bifunctional protein folD OS=Shewanella baltica (strain OS185) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G LA R   P+   CTP G + L+  +GV+  G +AVV+G SNIVG P +L L     T +  H  TKN EQ    AD+V+ A G    + G W+KPGA+V+DVG   +D            L+GDV Y+ A + AS ITPVPGGVGPMT+A LL NTL +A++
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGKPGFIPGEWIKPGAIVIDVGINRLDNGT---------LVGDVQYDVAAQNASFITPVPGGVGPMTIASLLENTLYAAEQ 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB5 (Bifunctional protein folD OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G LA R   P+   CTP G + L+  +GV+  G +AVV+G SNIVG P +L L     T +  H  TKN EQ    AD+V+ A G    + G W+KPGA+V+DVG   +D            L+GDV Y+ A + AS ITPVPGGVGPMT+A LL NTL +A++
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGKPGFIPGEWIKPGAIVIDVGINRLDNGT---------LVGDVQYDVAAQNASFITPVPGGVGPMTIASLLENTLYAAEQ 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_HERA28.513e-3148.48Bifunctional protein folD OS=Herpetosiphon auranti... [more]
FOLD_ERWCT8.513e-3143.64Bifunctional protein folD OS=Erwinia carotovora su... [more]
FOLD_DELAS8.513e-3147.13Bifunctional protein folD OS=Delftia acidovorans (... [more]
FOLD1_RUBXD8.513e-3146.75Bifunctional protein folD 1 OS=Rubrobacter xylanop... [more]
FOLD_VIBSL1.112e-3046.58Bifunctional protein folD OS=Vibrio splendidus (st... [more]
FOLD_SYNY31.112e-3044.12Bifunctional protein folD OS=Synechocystis sp. (st... [more]
FOLD_SOLUE1.112e-3045.18Bifunctional protein folD OS=Solibacter usitatus (... [more]
FOLD_SHEB91.112e-3045.78Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SHEB81.112e-3045.78Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SHEB51.112e-3045.78Bifunctional protein folD OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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