CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB2 (Bifunctional protein folD OS=Shewanella baltica (strain OS223) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G LA R   P+   CTP G + L+  +GV+  G +AVV+G SNIVG P +L L     T +  H  TKN EQ    AD+V+ A G    + G W+KPGA+V+DVG   +D            L+GDV Y+ A + AS ITPVPGGVGPMT+A LL NTL +A++
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIKSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKIRIADLVVVAVGKPGFIPGEWIKPGAIVIDVGINRLDNGT---------LVGDVQYDVAAQNASFITPVPGGVGPMTIASLLENTLYAAEQ 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROMM (Bifunctional protein folD OS=Prochlorococcus marinus (strain MIT 9313) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/162 (46.91%), Postives = 105/162 (64.81%), Query Frame = -1
Query:  169 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 654
            LN+G L ++G EP    CTP G + LL R  + +  K AVVIGRS +VG P +L+LQ  +ATVS+ H+ T +   +T +AD+++ AAG A ++    +KPGAVV+DVG   + +  +   +   RL GDV  +E   LAS +TPVPGGVGPMTV MLL NT+
Sbjct:  125 LNLGRL-LKG-EPGPRSCTPAGVMALLARHQISLERKRAVVIGRSILVGQPMALMLQAANATVSVAHSHTGDLASLTQQADVLVVAAGRARMIGAEHVKPGAVVVDVGIHRLPLDPELGTQAKARLCGDVRTQEVEPLASALTPVPGGVGPMTVTMLLVNTV 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BORA1 (Bifunctional protein folD OS=Bordetella avium (strain 197N) GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 74/162 (45.68%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  154 LAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 639
            L M G +PLF PCTP G +++L   GV + G  AVV+G SNIVG P ++LL    ATV+I ++ T++    T  AD+++ A G   ++ G  +KPGAVV+DVG    D           +L GDV +  A ++A  ITPVPGGVGPMT+AML+ NTL +A+R
Sbjct:  129 LLMTG-QPLFRPCTPYGVMKMLESEGVTLRGAEAVVVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAAQTRRADVLVVATGRPRMITGDMIKPGAVVIDVGINRGDDG---------KLCGDVDFASAQQVAGAITPVPGGVGPMTIAMLMVNTLQAAER 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AQUAE (Bifunctional protein folD OS=Aquifex aeolicus GN=folD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G L  +  E  FIPCTP G   LL   G+++ GK+  ++G   IVG P SLL+   +ATVS+ H  TK+ ++ T EADI+I+A GV +L++   +K GAVV+DVG   ++           +++GDV +E     AS ITPVPGGVGPMTV  LL NTL S KR +
Sbjct:  126 NMGKLVAQ-IEDGFIPCTPLGIDILLKHYGIDVKGKDVTIVGAGFIVGRPLSLLMLWRNATVSVCHIHTKDVKKFTKEADILISATGVPHLIKEDMIKEGAVVVDVGISRLN----------GKIVGDVDFERVKEKASAITPVPGGVGPMTVTALLLNTLKSYKRKF 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_DESHY (Bifunctional protein folD 2 OS=Desulfitobacterium hafniense (strain Y51) GN=folD2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 68/155 (43.87%), Postives = 99/155 (63.87%), Query Frame = -1
Query:  169 MRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 633
            + G E LF P TP+ CIE+++RSGVEI GK+ V++GR   VG P   L+ +H+ATV+I H+ T +    T +ADI++AA G A LV+   +KPGA+V+D G   +   +           GDV +EE   +AS+I+PVPGGVG +T A+++ N L
Sbjct:  130 LSGEEGLF-PATPESCIEIMLRSGVEIAGKHVVIVGRGETVGKPLVFLILKHNATVTICHSRTPDLGAFTRQADIIVAAVGKAKLVKKDMVKPGAIVVDAGINEIPGGI----------CGDVDFEEVKEVASLISPVPGGVGSLTTALIMKNVL 273          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRMU (Bifunctional protein folD OS=Streptococcus mutans GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N G+L   GR  + +PCTP G +E+L    V++ GK+AV+IGRSNIVG P + LL   +ATV++ H+ TK+  ++T  AD++I A G  N V   ++K GAVV+DVG          + +   +L+GDV ++   + AS+ITPVPGGVGPMT+ MLL  T  +A R+
Sbjct:  125 MNTGHL-WSGRS-MMVPCTPAGIMEMLSAYHVDLEGKHAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTKHLSEVTRCADVLIVAIGQGNFVTEEFVKEGAVVIDVGM---------NRDKNGKLIGDVNFDHVAQKASLITPVPGGVGPMTITMLLEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RICBR (Bifunctional protein folD OS=Rickettsia bellii (strain RML369-C) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            LN+G L   G +  F+PCT  GC+E++ +    + GKNA+++GRSNIVG P S LL + + +V+I H+ ++N   ITS+ADIV+AA G    +   + KP A+V+DVG   +          G +++GDV +E        ITPVPGG+GPMT+A LL NT+ + K
Sbjct:  125 LNVGYLHS-GIDNGFVPCTALGCLEVIKKHEPNLSGKNAIIVGRSNIVGKPLSALLLKENCSVTICHSKSQNLSSITSKADIVVAAIGSPLKLTSGYFKPDAIVIDVGINRIG---------GNKIVGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVQAFK 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RICB8 (Bifunctional protein folD OS=Rickettsia bellii (strain OSU 85-389) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            LN+G L   G +  F+PCT  GC+E++ +    + GKNA+++GRSNIVG P S LL + + +V+I H+ ++N   ITS+ADIV+AA G    +   + KP A+V+DVG   +          G +++GDV +E        ITPVPGG+GPMT+A LL NT+ + K
Sbjct:  125 LNVGYLHS-GIDNGFVPCTSLGCLEVIKKHEPNLSGKNAIIVGRSNIVGKPLSALLLKENCSVTICHSKSQNLSSITSKADIVVAAIGSPLKLTSGYFKPDAIVIDVGINRIG---------GNKIVGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVQAFK 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LACLA (Bifunctional protein folD OS=Lactococcus lactis subsp. lactis GN=folD PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/167 (44.31%), Postives = 104/167 (62.28%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+G L      PL IP TP G +E+     VE+ GK AVVIGRSNIVG P + LL    ATV+I H+ T+N  ++T EAD+++ A G   +++   +K GAVV+DVG          + +   +L GDV ++E   +AS+ITPVPGGVGPMT+ ML+  T+ +A R
Sbjct:  123 MNMGRLW--SGNPLMIPSTPAGIMEMFREYDVELSGKRAVVIGRSNIVGKPMAQLLMMADATVTIAHSKTENLRELTKEADVLVVAIGRDRMIKAEDVKEGAVVIDVGM---------NRDEDGKLHGDVDFDEVKDVASLITPVPGGVGPMTITMLMEQTVRAASR 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_IDILO (Bifunctional protein folD OS=Idiomarina loihiensis GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            NIG L+ R   P   PCTPKG + LL  + V++ G NAVV+G SNIVG P SL L    AT ++ H  TK+       ADIV+ A G A  + G W+KPGA+V+DVG   +            RL GDV +  A   A  ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NIGRLSQR--IPALRPCTPKGIMTLLEHTHVDLHGLNAVVVGASNIVGRPMSLELLLAGATTTVCHRFTKDLSDHVKRADIVVVAVGKAEFIPGEWIKPGAIVIDVGMNRLPDG---------RLTGDVEFSVAAERAGWITPVPGGVGPMTVASLIENTLQA 278          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_SHEB21.112e-3045.78Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_PROMM1.112e-3046.91Bifunctional protein folD OS=Prochlorococcus marin... [more]
FOLD_BORA11.112e-3045.68Bifunctional protein folD OS=Bordetella avium (str... [more]
FOLD_AQUAE1.112e-3045.24Bifunctional protein folD OS=Aquifex aeolicus GN=f... [more]
FOLD2_DESHY1.112e-3043.87Bifunctional protein folD 2 OS=Desulfitobacterium ... [more]
FOLD_STRMU1.452e-3044.05Bifunctional protein folD OS=Streptococcus mutans ... [more]
FOLD_RICBR1.452e-3042.17Bifunctional protein folD OS=Rickettsia bellii (st... [more]
FOLD_RICB81.452e-3042.17Bifunctional protein folD OS=Rickettsia bellii (st... [more]
FOLD_LACLA1.452e-3044.31Bifunctional protein folD OS=Lactococcus lactis su... [more]
FOLD_IDILO1.452e-3047.24Bifunctional protein folD OS=Idiomarina loihiensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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