CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ERWT9 (Bifunctional protein folD OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVV+G SNIVG P S+ L     T ++ H  TKN  Q    AD+++ A G    + G W+KPGA+V+DVG   ++           +++GDV ++ A   AS ITPVPGGVGPMTVA L+ NTL + +
Sbjct:  127 NVGRLCQRA--PTLRPCTPRGIVTLLERYQIDTFGLNAVVVGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRQHIENADLLVVAVGKPGFIPGDWIKPGAIVIDVGINRLESG---------KVVGDVDFDLASTRASWITPVPGGVGPMTVATLIQNTLQACE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ENTFA (Bifunctional protein folD OS=Enterococcus faecalis GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 71/167 (42.51%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+G L +   +P  IPCTP G +++     +++ GK AVVIGRSNIVG P + LL   +ATV+I H+ T++  ++  EADI++ A G  + V   ++KPGAVV+DVG          +     +L+GDV ++E   +AS ITPVP GVGPMT+ ML+  T+++AK+
Sbjct:  124 MNLGRLFVG--KPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMKNATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGM---------NRNQEGKLIGDVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKK 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DIAST (Bifunctional protein folD OS=Diaphorobacter sp. (strain TPSY) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = -1
Query:  154 FIPCTPKGCIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 612
            F  CTP GC+++L   G+ ++ GK+AVVIGRSNIVG P +++L   +ATV++ H+ T +   +T +AD+V+AA G  N++    +KPGAVV+DVG    D           +L GDV +E   ++A  ITPVPGGVGPMT+ MLL NTL++A+R
Sbjct:  137 FKACTPYGCMKMLESIGMKDLRGKHAVVIGRSNIVGKPMAMMLLAANATVTVCHSGTADLAAMTRQADVVVAAVGKRNVLTADMVKPGAVVIDVGMNRNDEG---------KLCGDVDFEGVKQVAGYITPVPGGVGPMTITMLLVNTLEAAER 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHRSD (Bifunctional protein folD OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 76/165 (46.06%), Postives = 99/165 (60.00%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   P+  PCTPKG + LL  SG+   G +AV++G SNIVG P +L L    +T ++ H  T++ E     AD+++ A G   LV+G W+K GAVV+DVG    D           +L GDV +  A   AS ITPVPGGVGPMTVA LL NTL +A+
Sbjct:  127 NLGRLAQR--LPVLRPCTPKGIMTLLQESGIHARGLDAVIVGASNIVGRPMALELMLAGSTTTVCHRFTRDLESHVRRADLLVVAVGRPGLVKGEWVKEGAVVIDVGINRQDDG---------KLAGDVEFAPAAARASYITPVPGGVGPMTVASLLENTLFAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURPS (Bifunctional protein folD OS=Burkholderia pseudomallei GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +PLF PCTP G +++     + + G NAVVIGRSNIVG P +LLL    ATV+I H+ T+     T  ADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +    ++A  ITPVPGGVGPMT+ MLL NT+++A+RA
Sbjct:  134 KPLFRPCTPYGVMKMFEAYKIPLQGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRELAAHTRAADIVVAAVGKRNVLTADMVKPGATVIDVGMNRNDEG---------KLCGDVDFAGVSQVAGHITPVPGGVGPMTITMLLVNTIEAAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURP6 (Bifunctional protein folD OS=Burkholderia pseudomallei (strain 668) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +PLF PCTP G +++     + + G NAVVIGRSNIVG P +LLL    ATV+I H+ T+     T  ADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +    ++A  ITPVPGGVGPMT+ MLL NT+++A+RA
Sbjct:  134 KPLFRPCTPYGVMKMFEAYKIPLQGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRELAAHTRAADIVVAAVGKRNVLTADMVKPGATVIDVGMNRNDEG---------KLCGDVDFAGVSQVAGHITPVPGGVGPMTITMLLVNTIEAAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURP1 (Bifunctional protein folD OS=Burkholderia pseudomallei (strain 1710b) GN=folD PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +PLF PCTP G +++     + + G NAVVIGRSNIVG P +LLL    ATV+I H+ T+     T  ADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +    ++A  ITPVPGGVGPMT+ MLL NT+++A+RA
Sbjct:  134 KPLFRPCTPYGVMKMFEAYKIPLQGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRELAAHTRAADIVVAAVGKRNVLTADMVKPGATVIDVGMNRNDEG---------KLCGDVDFAGVSQVAGHITPVPGGVGPMTITMLLVNTIEAAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BURP0 (Bifunctional protein folD OS=Burkholderia pseudomallei (strain 1106a) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +PLF PCTP G +++     + + G NAVVIGRSNIVG P +LLL    ATV+I H+ T+     T  ADIV+AA G  N++    +KPGA V+DVG    D           +L GDV +    ++A  ITPVPGGVGPMT+ MLL NT+++A+RA
Sbjct:  134 KPLFRPCTPYGVMKMFEAYKIPLQGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRELAAHTRAADIVVAAVGKRNVLTADMVKPGATVIDVGMNRNDEG---------KLCGDVDFAGVSQVAGHITPVPGGVGPMTITMLLVNTIEAAERA 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ACISJ (Bifunctional protein folD OS=Acidovorax sp. (strain JS42) GN=folD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = -1
Query:  154 FIPCTPKGCIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 612
            F  CTP GC+++L   G+ ++ GK+AVVIGRSNIVG P +++L   +ATV++ H+ T +   +T +AD+V+AA G  N++    +KPGAVV+DVG    D           +L GDV +E   ++A  ITPVPGGVGPMT+ MLL NTL++A+R
Sbjct:  137 FKACTPYGCMKMLESIGMKDLRGKHAVVIGRSNIVGKPMAMMLLAANATVTVCHSGTADLAAMTRQADVVVAAVGKRNVLTADMVKPGAVVIDVGMNRNDEG---------KLCGDVDFEGVKQVAGYITPVPGGVGPMTITMLLVNTLEAAER 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_HALMA (Bifunctional protein folD 2 OS=Haloarcula marismortui GN=folD2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L        + PCTP G  ++L  +GV   GK+ VV+GRS+IVG P + LL ++    +AT ++ H+ T +    T  ADIVIAAAGV  ++ GS L  G  V+DVG   VD       E GY L+GDV +E A   A  ITPVPGGVGP+T+AMLL NT+ +A    G
Sbjct:  125 NVGRLVAGNAR--YKPCTPHGIQKMLAETGVVTEGKDVVVVGRSDIVGKPMANLLIQYGPGGNATTTVCHSRTDDLADKTRNADIVIAAAGVPEMIDGSMLSAGTTVIDVGINRVDADT----EKGYELVGDVDFESAKEKADAITPVPGGVGPLTIAMLLYNTVKAASLQSG 291          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_ERWT91.452e-3043.03Bifunctional protein folD OS=Erwinia tasmaniensis ... [more]
FOLD_ENTFA1.452e-3042.51Bifunctional protein folD OS=Enterococcus faecalis... [more]
FOLD_DIAST1.452e-3046.75Bifunctional protein folD OS=Diaphorobacter sp. (s... [more]
FOLD_CHRSD1.452e-3046.06Bifunctional protein folD OS=Chromohalobacter sale... [more]
FOLD_BURPS1.452e-3047.13Bifunctional protein folD OS=Burkholderia pseudoma... [more]
FOLD_BURP61.452e-3047.13Bifunctional protein folD OS=Burkholderia pseudoma... [more]
FOLD_BURP11.452e-3047.13Bifunctional protein folD OS=Burkholderia pseudoma... [more]
FOLD_BURP01.452e-3047.13Bifunctional protein folD OS=Burkholderia pseudoma... [more]
FOLD_ACISJ1.452e-3046.75Bifunctional protein folD OS=Acidovorax sp. (strai... [more]
FOLD2_HALMA1.452e-3045.09Bifunctional protein folD 2 OS=Haloarcula marismor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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