CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBFM (Bifunctional protein folD OS=Vibrio fischeri (strain MJ11) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L+ R   P    CTPKG I LL R  +++ G +AVV+G SNIVG P +L L     T +  H  TK+ E    +AD+V+ A G  N + G W+K GAVV+DVG   +D           +L+GDV Y+ A   AS ITPVPGGVGPMTVA L+ NTL
Sbjct:  127 NVGRLSQR--IPKLRSCTPKGIITLLDRYNIQVRGMHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLESHIRQADLVVVAVGKPNFIPGEWIKEGAVVVDVGINRLDSG---------KLIGDVEYDVAKTKASYITPVPGGVGPMTVATLIENTL 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBF1 (Bifunctional protein folD OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L+ R   P    CTPKG I LL R  +++ G +AVV+G SNIVG P +L L     T +  H  TK+ E    +AD+V+ A G  N + G W+K GAVV+DVG   +D           +L+GDV Y+ A   AS ITPVPGGVGPMTVA L+ NTL
Sbjct:  127 NVGRLSQR--IPKLRSCTPKGIITLLDRYNIQVRGMHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLESHIRQADLVVVAVGKPNFIPGEWIKEGAVVVDVGINRLDSG---------KLIGDVEYDVAKTKASYITPVPGGVGPMTVATLIENTL 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VESOH (Bifunctional protein folD OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            NIG L     +P   PCTPKG + +L    ++++GKN VV+G SNIVG P +  L    ATV+I ++ TKN      +ADIV+ A G+  +++  W+KPGA+V+DVG       +D  C     L+GDV +E   ++A  I PVPGGVGPMT+A LL NTL
Sbjct:  121 NIGKLMQN--KPFLHPCTPKGVMLMLESIEIDLVGKNCVVVGASNIVGRPMACELLNAKATVTICNSKTKNLSCKLIQADIVVVAVGIPKMIQSDWIKPGAIVIDVGI----NRLDNGC-----LVGDVDFESVRKVAGWIAPVPGGVGPMTIATLLKNTL 270          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRTR (Bifunctional protein folD OS=Streptococcus thermophilus GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N GNL   GR P  +PCTP G +E+L    VE+ GK AV+IGRSNIVG P + LL   +ATV++ H+ T +  ++ ++AD++I A G A  V   ++K GAVV+DVG     ++ D   E G +L GDV +++     S+ITPVPGGVGPMT+ ML+  T  +A R+
Sbjct:  125 MNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFVTEEFVKEGAVVIDVG-----INRD---EEG-KLCGDVDFDQVKEKVSMITPVPGGVGPMTITMLMEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRTD (Bifunctional protein folD OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N GNL   GR P  +PCTP G +E+L    VE+ GK AV+IGRSNIVG P + LL   +ATV++ H+ T +  ++ ++AD++I A G A  V   ++K GAVV+DVG     ++ D   E G +L GDV +++     S+ITPVPGGVGPMT+ ML+  T  +A R+
Sbjct:  125 MNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFVTEEFVKEGAVVIDVG-----INRD---EEG-KLCGDVDFDQVKEKVSMITPVPGGVGPMTITMLMEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRT2 (Bifunctional protein folD OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=folD PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N GNL   GR P  +PCTP G +E+L    VE+ GK AV+IGRSNIVG P + LL   +ATV++ H+ T +  ++ ++AD++I A G A  V   ++K GAVV+DVG     ++ D   E G +L GDV +++     S+ITPVPGGVGPMT+ ML+  T  +A R+
Sbjct:  125 MNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFVTEEFVKEGAVVIDVG-----INRD---EEG-KLCGDVDFDQVKEKVSMITPVPGGVGPMTITMLMEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRT1 (Bifunctional protein folD OS=Streptococcus thermophilus (strain CNRZ 1066) GN=folD PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N GNL   GR P  +PCTP G +E+L    VE+ GK AV+IGRSNIVG P + LL   +ATV++ H+ T +  ++ ++AD++I A G A  V   ++K GAVV+DVG     ++ D   E G +L GDV +++     S+ITPVPGGVGPMT+ ML+  T  +A R+
Sbjct:  125 MNTGNL-WNGR-PQMVPCTPAGIMEILREYNVELEGKTAVIIGRSNIVGKPMAQLLLEKNATVTLTHSRTPHLAKVCNKADVLIVAIGRAKFVTEEFVKEGAVVIDVG-----INRD---EEG-KLCGDVDFDQVKEKVSMITPVPGGVGPMTITMLMEQTYQAALRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEAM (Bifunctional protein folD OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   P+   CTP G + L+  +GV+  G +AVV+G SNIVG P +L L     T +  H  TKN E    +AD+++ A G  + + G W+KPGA+V+DVG   +D           RL+GDV ++ A   A+ ITPVPGGVGPMT+A LL NTL +A+
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIRSTGVDTYGLDAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEDKVRQADLLVVAVGKPHFIPGDWIKPGAIVIDVGINRLDDG---------RLVGDVEFDVAAERAAFITPVPGGVGPMTIASLLENTLYAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALEP (Bifunctional protein folD OS=Salmonella enteritidis PT4 (strain P125109) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKIVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PSEHT (Bifunctional protein folD OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 74/166 (44.58%), Postives = 98/166 (59.04%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            NIG LA R   P   PCTPKG I LL  +GV   G +AVV+G SNIVG P +L L     T ++ H  T++ E     AD+++ A G    + G W+K GA+V+DVG   +D           +L+GDV Y  A + A  ITPVPGGVGPMTVA L+ NTL++ ++
Sbjct:  127 NIGRLAQR--MPALRPCTPKGIITLLDSTGVRYKGLHAVVVGASNIVGRPMALELLLAGCTTTVCHKFTQDLETHVRRADLLVVAVGKPEFIPGDWVKEGAIVIDVGINRLDSG---------KLVGDVEYSVAEQKADFITPVPGGVGPMTVASLIENTLEACEK 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_VIBFM4.225e-3046.58Bifunctional protein folD OS=Vibrio fischeri (stra... [more]
FOLD_VIBF14.225e-3046.58Bifunctional protein folD OS=Vibrio fischeri (stra... [more]
FOLD_VESOH4.225e-3044.72Bifunctional protein folD OS=Vesicomyosocius okuta... [more]
FOLD_STRTR4.225e-3045.24Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_STRTD4.225e-3045.24Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_STRT24.225e-3045.24Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_STRT14.225e-3045.24Bifunctional protein folD OS=Streptococcus thermop... [more]
FOLD_SHEAM4.225e-3044.24Bifunctional protein folD OS=Shewanella amazonensi... [more]
FOLD_SALEP4.225e-3043.56Bifunctional protein folD OS=Salmonella enteritidi... [more]
FOLD_PSEHT4.225e-3044.58Bifunctional protein folD OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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