CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROMS (Bifunctional protein folD OS=Prochlorococcus marinus (strain AS9601) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 78/172 (45.35%), Postives = 103/172 (59.88%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +NIG L     EP    CTP G I LL    + I GK  VVIGRS +VG P SL+L   + TV++ H+ T N  ++  EADI+IAAAG  NL+  S++K GAV++DVG       +  S +   RL GDV  E+ +      TPVPGGVGPMTV MLL NT+ S ++ +G +
Sbjct:  125 INIGKLVKN--EPGMRSCTPAGIINLLRSQNITIEGKKIVVIGRSLLVGKPLSLMLLNLNGTVTMTHSKTLNLNKVCREADILIAAAGKPNLIDSSFVKEGAVIIDVGI----HRLKSSDKNQTRLCGDVLLEDVISKVFAYTPVPGGVGPMTVTMLLVNTIFSWQKQFGLS 290          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NITMU (Bifunctional protein folD OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = -1
Query:  148 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 615
            +F PCTP G +++L +  + I G++AV++GRSNIVG P +L+L +  ATV+I  + T+N  + TS ADI+I AAG   L+    +KPGA V+DVG   +            +L GDV +E     A  ITPVPGGVGPMT+AMLL NT+ +A++A+
Sbjct:  136 IFPPCTPNGVMKMLEKYDIPIEGQHAVIVGRSNIVGKPMALMLLQKGATVTICTSRTRNLAEHTSRADILIVAAGKPRLITAMMVKPGATVIDVGINRLSDG---------KLAGDVDFESVKEKAGYITPVPGGVGPMTIAMLLCNTVVAAEQAH 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEOSM (Bifunctional protein folD OS=Neorickettsia sennetsu (strain Miyayama) GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 70/162 (43.21%), Postives = 106/162 (65.43%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA+  ++ L  PCTP G + L+  + G  + G +AVVIGRSNIVG P ++LL   + T+++ H+ T+N ++ T +ADIVI+A G+ + V+  ++KPGA V+DVG   VD           +L+GDV +E+ ++    ITPVP GVGPMT+A L+ NT+
Sbjct:  126 NVGRLAL-SKDALLKPCTPAGSLYLIKSALGDNLSGMDAVVIGRSNIVGKPMAMLLLHENCTITLTHSKTRNIQEKTRQADIVISAVGIPHFVKKDFIKPGATVIDVGMNKVD----------GKLVGDVDFEDVLQKVKFITPVPRGVGPMTIAFLMLNTV 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LEIXX (Bifunctional protein folD OS=Leifsonia xyli subsp. xyli GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  151 NIGNLAMRGREPLF--IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            N+G L +    P+   +PCTP+G IEL++R G+++ GK+ VV+GR   VG     LL R   +ATV++ H  TK+ ++    AD+++AAAGV  LV    +KPGA+VLDVG   V+   DP      R+ GDV  + A  +AS I+P PGGVGPMT A+LL N ++SA+RA
Sbjct:  126 NLGRLVLNVNRPITTPLPCTPRGVIELMLRHGIDLAGKDVVVVGRGVTVGRSIGALLTRREVNATVTLTHTGTKSLDEHLRSADVIVAAAGVPGLVSAENVKPGAIVLDVGVSRVE---DPETGKS-RVAGDVAADVA-GVASWISPNPGGVGPMTRALLLQNVVESAERA 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CLOAB (Bifunctional protein folD OS=Clostridium acetobutylicum GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = -1
Query:  157 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 621
            E  FIPCTP+  I L+    V+I GKNAVVIGRSNIVG PT+ LL   +ATV+I H+ T+N + I  +ADI+++A G    +   ++   ++V+DVGT  VD           +L GDV ++E ++ A+ +TPVPGGVG MT  ML+ N  ++ K
Sbjct:  134 EKSFIPCTPRSIINLIKSLNVDICGKNAVVIGRSNIVGKPTAQLLLNENATVTICHSRTQNLKDICKKADIIVSAIGRPGFITDEFVNEKSIVIDVGTTVVD----------GKLRGDVVFDEVIKKAAYVTPVPGGVGAMTTTMLILNVCEALK 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHLCV (Bifunctional protein folD OS=Chlamydophila caviae GN=folD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 73/172 (42.44%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N+G L + G+   F PCTP G IELL    + + G++  V+GRSNIVG P  ++L+Q+H   +ATV+++H+ ++N  +I   ADI+IAA GV   ++ + +   A+V+DVGT  V  + D     GY L+GDV +   +     ++PVPGGVGPMTVAML+ NT +S K++
Sbjct:  119 INMGKLLL-GQLGGFAPCTPAGIIELLHYYEIPLHGRHVAVVGRSNIVGKPLAAMLMQKHPSTNATVTLLHSQSENLTEILKTADIIIAAVGVPLFIKETMISSHAIVVDVGTSRVAANNDK----GYTLVGDVDFNNVVAKCKAVSPVPGGVGPMTVAMLMKNTWESYKKS 285          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALTY (Bifunctional protein folD OS=Salmonella typhimurium GN=folD PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALTI (Bifunctional protein folD OS=Salmonella typhi GN=folD PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALSV (Bifunctional protein folD OS=Salmonella schwarzengrund (strain CVM19633) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALPK (Bifunctional protein folD OS=Salmonella paratyphi A (strain AKU_12601) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_PROMS4.225e-3045.35Bifunctional protein folD OS=Prochlorococcus marin... [more]
FOLD_NITMU4.225e-3045.51Bifunctional protein folD OS=Nitrosospira multifor... [more]
FOLD_NEOSM4.225e-3043.21Bifunctional protein folD OS=Neorickettsia sennets... [more]
FOLD_LEIXX4.225e-3045.03Bifunctional protein folD OS=Leifsonia xyli subsp.... [more]
FOLD_CLOAB4.225e-3044.52Bifunctional protein folD OS=Clostridium acetobuty... [more]
FOLD_CHLCV4.225e-3042.44Bifunctional protein folD OS=Chlamydophila caviae ... [more]
FOLD_SALTY5.518e-3043.56Bifunctional protein folD OS=Salmonella typhimuriu... [more]
FOLD_SALTI5.518e-3043.56Bifunctional protein folD OS=Salmonella typhi GN=f... [more]
FOLD_SALSV5.518e-3043.56Bifunctional protein folD OS=Salmonella schwarzeng... [more]
FOLD_SALPK5.518e-3043.56Bifunctional protein folD OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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