CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALPC (Bifunctional protein folD OS=Salmonella paratyphi C (strain RKS4594) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALPB (Bifunctional protein folD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALPA (Bifunctional protein folD OS=Salmonella paratyphi A GN=folD PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALNS (Bifunctional protein folD OS=Salmonella newport (strain SL254) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALHS (Bifunctional protein folD OS=Salmonella heidelberg (strain SL476) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALG2 (Bifunctional protein folD OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALDC (Bifunctional protein folD OS=Salmonella dublin (strain CT_02021853) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALCH (Bifunctional protein folD OS=Salmonella choleraesuis GN=folD PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SALA4 (Bifunctional protein folD OS=Salmonella agona (strain SL483) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = -1 
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TK+       AD++I A G    + G W+K GA+V+DVG   ++           +++GDV ++EA   AS ITPVPGGVGPMTVA L+ NTL +
Sbjct:  127 NVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLE---------NGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTLQA 278
[Close]
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS5 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=folD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = -1 
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L    +    +PCTP GC+ +L      + G NAVV+GRSNIVG P + LL     TV+I H+ TK+   +   ADI++AA G   ++ G ++KPGA V+DVG   ++       +   +L+GDV +  A  +A  ITPVPGGVGPMT+A LL+NTL +  RA G
Sbjct:  127 NVGRLGTGQKS--MVPCTPLGCLMMLRDHLGNLSGLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTKDLAAVCRGADILVAAVGRPEMITGEFIKPGATVIDVGINRIE------RDGKTKLVGDVDFASAAEVAGAITPVPGGVGPMTIACLLANTLTACCRANG 287
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_SALPC5.518e-3043.56Bifunctional protein folD OS=Salmonella paratyphi ... [more]
FOLD_SALPB5.518e-3043.56Bifunctional protein folD OS=Salmonella paratyphi ... [more]
FOLD_SALPA5.518e-3043.56Bifunctional protein folD OS=Salmonella paratyphi ... [more]
FOLD_SALNS5.518e-3043.56Bifunctional protein folD OS=Salmonella newport (s... [more]
FOLD_SALHS5.518e-3043.56Bifunctional protein folD OS=Salmonella heidelberg... [more]
FOLD_SALG25.518e-3043.56Bifunctional protein folD OS=Salmonella gallinarum... [more]
FOLD_SALDC5.518e-3043.56Bifunctional protein folD OS=Salmonella dublin (st... [more]
FOLD_SALCH5.518e-3043.56Bifunctional protein folD OS=Salmonella choleraesu... [more]
FOLD_SALA45.518e-3043.56Bifunctional protein folD OS=Salmonella agona (str... [more]
FOLD_RHOS55.518e-3043.20Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
back to top