CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VEREI (Bifunctional protein folD OS=Verminephrobacter eiseniae (strain EF01-2) GN=folD PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = -1
Query:  151 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 612
            F PCTP GC++L+  +G  I G++AV++GRS  VG P +LLL + +ATV++ H+ T +    T +ADIV+AA G A ++    +KPGA+V+DVG   ++   D       +L GDV ++   ++A  ITPVPGGVGPMT+ MLL NT+ + +R+
Sbjct:  137 FRPCTPYGCMKLIESTGQAIAGRHAVIVGRSQTVGKPMALLLLQANATVTLCHSATPDLGYHTRQADIVVAAVGRARMLTAEMVKPGAIVIDVG---INRQADG------KLCGDVDFDRVKQVAGWITPVPGGVGPMTITMLLVNTMQATERS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS4 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L    +    +PCTP GC+ +L      + G NAVV+GRSNIVG P + LL     TV+I H+ T++   +   ADI++AA G   ++ G ++KPGA V+DVG   ++       +   +L+GDV Y  A  +A  ITPVPGGVGPMT+A LL+NTL +  RA G
Sbjct:  127 NVGRLGTGQKS--MVPCTPLGCLMMLRDHLGALSGLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTRDLAAVCRGADILVAAVGRPEMITGDFVKPGATVIDVGINRIE------RDGKTKLVGDVDYASAAEVAGAITPVPGGVGPMTIACLLANTLTACCRANG 287          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS1 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L    +    +PCTP GC+ +L      + G NAVV+GRSNIVG P + LL     TV+I H+ T++   +   ADI++AA G   ++ G ++KPGA V+DVG   ++       +   +L+GDV Y  A  +A  ITPVPGGVGPMT+A LL+NTL +  RA G
Sbjct:  127 NVGRLGTGQKS--MVPCTPLGCLMMLRDHLGTLSGLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTRDLAAVCRGADILVAAVGRPEMITGDFVKPGATVIDVGINRIE------RDGKTKLVGDVDYASAAEVAGAITPVPGGVGPMTIACLLANTLTACCRANG 287          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOPT (Bifunctional protein folD OS=Rhodopseudomonas palustris (strain TIE-1) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = -1
Query:  145 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 606
            PCTP G I +       + G NA+VIGRSN+VG P   LL   +ATV+I H+ T++   +  +AD+V AA G A +V+G W+KPGA V+DVG     ++  P  + G  +L+GDV + EA  +A  ITPVPGGVG MTVA LL NT+ +A   +G
Sbjct:  140 PCTPLGSIIMAKTVHASLEGMNALVIGRSNLVGKPLVQLLLNENATVTIAHSRTRDLPALCRQADLVFAAVGKAEMVKGDWIKPGATVIDVG-----INRTPGKDGGKDKLLGDVAFAEAKEVAGAITPVPGGVGLMTVACLLVNTVRAACAIHG 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOPA (Bifunctional protein folD OS=Rhodopseudomonas palustris GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = -1
Query:  145 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 606
            PCTP G I +       + G NA+VIGRSN+VG P   LL   +ATV+I H+ T++   +  +AD+V AA G A +V+G W+KPGA V+DVG     ++  P  + G  +L+GDV + EA  +A  ITPVPGGVG MTVA LL NT+ +A   +G
Sbjct:  140 PCTPLGSIIMAKTVHASLEGMNALVIGRSNLVGKPLVQLLLNENATVTIAHSRTRDLPALCRQADLVFAAVGKAEMVKGDWIKPGATVIDVG-----INRTPGKDGGKDKLLGDVAFAEAKEVAGAITPVPGGVGLMTVACLLVNTVRAACAIHG 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROMH (Bifunctional protein folD OS=Proteus mirabilis (strain HI4320) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            NIG L  R   P   PCTP+G + LL R  + + G NAV+IG SNIVG P SL L     T ++ H  TK+       AD+V+ A G  N + G W+KPGA+V+DVG   ++           +++GDV + +A + A  I+PVPGGVGPMTVA L+ NTL + +
Sbjct:  127 NIGRLCQRA--PKLRPCTPRGIVTLLERCNIPMNGLNAVIIGASNIVGRPMSLELLLAGCTTTVTHRFTKDLRFHVEHADLVVVAVGKPNFIPGEWIKPGAIVIDVGINRLE---------NGKVVGDVDFAQASQRAGWISPVPGGVGPMTVATLIQNTLQACE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROM9 (Bifunctional protein folD OS=Prochlorococcus marinus (strain MIT 9312) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +NIG L     EP    CTP G I LL    + I GK  VVIGRS +VG P SL+L   + TV++ H+ T +  ++  EADI+IAAAG  NL+  S++K GAV++DVG       +  S +   RL GDV  E+ +      TPVPGGVGPMTV MLL NT+ S ++ +G +
Sbjct:  125 INIGKLVKN--EPAMRSCTPAGIINLLRSQNITIEGKKIVVIGRSLLVGKPLSLMLLNLNGTVTMTHSKTLDLNKVCKEADILIAAAGKPNLIDSSFVKEGAVIIDVGI----HRLKSSDKNKTRLCGDVLLEDVIPKVLAYTPVPGGVGPMTVTMLLVNTIFSWQKQFGLS 290          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NOSP7 (Bifunctional protein folD OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 80/168 (47.62%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N+G L +RG   L   CTP G + LL    + + GK AVV+GRS +VG P +L+L    ATV+I H+ + + + IT  ADI+IAAAG   L+    +KPGAVV+DVG   V  +   S     RL+GDV +E    +A  ITPVPGGVGPMTVA+LL NT  S  RA
Sbjct:  129 VNLGRL-VRGEIGLR-SCTPDGVMRLLQEYEIPLQGKQAVVVGRSILVGKPMALMLLEADATVTIAHSRSHDLKSITQNADILIAAAGRPGLITADMVKPGAVVVDVGMNRVTDASGKS-----RLIGDVDFESTAGVAGFITPVPGGVGPMTVAILLQNTFTSYSRA 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_EXISA (Bifunctional protein folD OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G + M G + L +PCTP G + L  ++  EI GK+ VV+GRS IVG P  +L     ATV+  H+ T +  ++T +ADI+I A G A LV    +KPGA+V+DVG   V+           RL+GDV YE     AS ITPVPGGVGPMT+ ML+ NT++ A R
Sbjct:  125 NVGKM-MLGLDTL-LPCTPHGILHLA-KTQTEIAGKHVVVVGRSQIVGKPVGMLFLNESATVTYCHSKTADLGEMTRQADILIVAVGRAGLVTSDMVKPGALVIDVGVNRVE----------GRLVGDVDYEAVKEKASAITPVPGGVGPMTITMLMHNTVEVASR 277          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ALISL (Bifunctional protein folD OS=Aliivibrio salmonicida (strain LFI1238) GN=folD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 74/161 (45.96%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G L+ R   P    CTPKG I LL R  +++ G +AVV+G SNIVG P +L L     T +  H  TK+ E    +AD+V+ A G  N + G W+K GAVV+DVG   +D           +L+GDV ++ A   AS ITPVPGGVGPMTVA L+ NTL
Sbjct:  127 NVGRLSQR--IPKLRSCTPKGIITLLDRYNIQVRGMHAVVVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEHHIRQADLVVVAVGKPNFIPGEWIKEGAVVVDVGINRLDTG---------KLIGDVEFDVAKTKASYITPVPGGVGPMTVASLIENTL 276          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_VEREI7.206e-3044.16Bifunctional protein folD OS=Verminephrobacter eis... [more]
FOLD_RHOS47.206e-3043.20Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_RHOS17.206e-3043.20Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_RHOPT7.206e-3046.45Bifunctional protein folD OS=Rhodopseudomonas palu... [more]
FOLD_RHOPA7.206e-3046.45Bifunctional protein folD OS=Rhodopseudomonas palu... [more]
FOLD_PROMH7.206e-3043.03Bifunctional protein folD OS=Proteus mirabilis (st... [more]
FOLD_PROM97.206e-3044.77Bifunctional protein folD OS=Prochlorococcus marin... [more]
FOLD_NOSP77.206e-3047.62Bifunctional protein folD OS=Nostoc punctiforme (s... [more]
FOLD_EXISA7.206e-3045.78Bifunctional protein folD OS=Exiguobacterium sp. (... [more]
FOLD_ALISL7.206e-3045.96Bifunctional protein folD OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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