CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_SPHWW (Bifunctional protein folD 2 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 75/166 (45.18%), Postives = 107/166 (64.46%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L+  G   L +PCTP G + LL     ++ G +AVVIG+SNIVG P ++LL    ATV++ H  T+    I  +ADI++AAAG   LV+G W+K GAV++DVG     ++  P      RL+GDV ++E    A  +TPVPGGVGPMT+A LL+NT+ +A+
Sbjct:  137 VNVGRLST-GTGGL-VPCTPLGVMMLLDSVIDDMKGMDAVVIGKSNIVGKPIAMLLLEREATVTVTHIETRGLPDIVRKADIIVAAAGAPRLVKGYWVKEGAVIIDVG-----ITRLPGEGGKTRLVGDVAFDEVQH-ARAVTPVPGGVGPMTIACLLANTVKAAE 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOSK (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 72/169 (42.60%), Postives = 102/169 (60.36%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L    +    +PCTP GC+ +L      + G NAVV+GRSNIVG P + LL     TV++ H+ T++   +   ADI++AA G   ++ G ++KPGA V+DVG   ++       +   +L+GDV Y  A  +A  ITPVPGGVGPMT+A LL+NTL +  RA G
Sbjct:  127 NVGRLGTGQKS--MVPCTPLGCLMMLRDHLGTLSGLNAVVVGRSNIVGKPMAQLLLGESCTVTVAHSRTRDLAAVCRGADILVAAVGRPEMITGDFVKPGATVIDVGINRIE------RDGKTKLVGDVDYASAAEVAGAITPVPGGVGPMTIACLLANTLTACCRANG 287          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RALME (Bifunctional protein folD OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 70/158 (44.30%), Postives = 99/158 (62.66%), Query Frame = -1
Query:  145 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 618
            PLF PCTP GC+++L      + G  AVV+G SNIVG P +++L +  ATV+I ++ T++    T +AD+++AA G  N++    +KPGAVV+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL NTL++A+R  G
Sbjct:  135 PLFRPCTPYGCMKMLESIQYPLRGARAVVVGASNIVGKPMAMMLLQAGATVTICNSKTRDLAAHTRDADVIVAAVGRRNIITADIVKPGAVVIDVGMNRDDAG---------KLCGDVDFAGVREVAGHITPVPGGVGPMTITMLLINTLEAAEREAG 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_METAC (Bifunctional protein folD OS=Methanosarcina acetivorans GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  151 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            N+G L M G E L +PCTP G I  L   GV + GKNAV++G SN+VG P + +L   +ATVS+ H  T + ++ T  ADI++ A GV +L++   +K G V+ D G    +  V           GDV +E  ++ AS++TPVPGGVGPMT+AML+ + L  A+++
Sbjct:  135 NMGKL-MIGDEDL-VPCTPHGVIRALEEYGVSVQGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHIFTDDLKKYTLGADIIVVATGVKHLIKADMVKEGTVIFDAGITKEEDGV----------YGDVDFENVIKKASLVTPVPGGVGPMTIAMLMKHVLLCAEKS 289          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HYDS0 (Bifunctional protein folD OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L     E  FIPCTP G   LL    +++ GKN  ++G   IVG P S+L+  + ATVS+ H  TK+  + T  ADI+I+A GV  L++   +K GAVV+DVG   V+           +++GDV +E   + AS ITPVPGGVGPMTVA LL NTL + K+
Sbjct:  121 NMGKLFSGDLENAFIPCTPLGIKLLLDEYNIDLKGKNVCIVGAGFIVGKPLSMLMLNYDATVSVCHKYTKDIVEYTKTADILISATGVPFLIKDYMVKEGAVVIDVGISKVN----------GKIVGDVDFESISQKASFITPVPGGVGPMTVATLLLNTLKAYKQ 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHLFF (Bifunctional protein folD OS=Chlamydophila felis (strain Fe/C-56) GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 72/172 (41.86%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N+G L + G+   F PCTP   IELL    + + G++  V+GRSNIVG P  ++L+Q+H   +ATV+++H+ ++N  +I   ADI++AA GV   ++ + + P AV++DVG   V  + D     GY L+GDV +   +     ITPVPGGVGPMTVAML+ NT +S +++
Sbjct:  119 VNMGKLLL-GQLGGFSPCTPAAVIELLNYYDIPLQGRHVAVVGRSNIVGKPLAAMLMQKHPTTNATVTLLHSQSQNFTEILKTADIIVAAVGVPLFIQENMISPNAVIVDVGISRVATNNDK----GYMLVGDVDFNNVVTKCKAITPVPGGVGPMTVAMLMKNTWESYQKS 285          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRAHW (Bifunctional protein folD OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=folD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = -1
Query:  169 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 606
            PCT K  + L+ +SG+ I G NAVVIGRS IVG P + LL +  ATV+I H+ TKN +++   ADI+  + G A  + G ++K GAVV+DVG   ++V  D S      L GDV +EEA +LAS ITPVP GVG +TV+MLL N L
Sbjct:  135 PCTAKSAMALIEKSGINIEGANAVVIGRSEIVGKPLAHLLLQKSATVTIAHSKTKNLKELCKNADILCVSIGKAEFITGEYIKEGAVVIDVG---INVLEDGS------LKGDVNFEEASKLASYITPVPNGVGSVTVSMLLDNVL 271          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRSV (Bifunctional protein folD OS=Streptococcus sanguinis (strain SK36) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 72/168 (42.86%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            LN+G L      P+ IP TP G + +    G+E+ GK AVVIGRSNIVG P + LL   +ATV++ H+ T N  +    ADI++ A G  + V  +++K GAVV+DVG          + +   +L+GDV ++E   +AS+ITPVPGGVGPMT+ ML+  T  + KR+
Sbjct:  125 LNMGKLW--SGHPVMIPATPAGIMAMFHEYGIELEGKRAVVIGRSNIVGKPMAQLLLAKNATVTLTHSRTHNLAKTAKRADILVVAIGRGHFVTKNFVKEGAVVIDVGM---------NRDENGKLIGDVKFDEVAEIASLITPVPGGVGPMTITMLMEQTYQAFKRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STRGC (Bifunctional protein folD OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 73/168 (43.45%), Postives = 102/168 (60.71%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            LN+G L      P+ IP TP G + +    GVE+ GK AVVIGRSNIVG P + LL   +ATV++ H+ T N  +    ADI++ A G  + V   ++K GAVV+DVG          + +   +L+GDV ++E   +AS+ITPVPGGVGPMT+ ML+  T  + KR+
Sbjct:  125 LNMGKLW--SGHPVMIPATPAGIMAMFHEYGVELEGKRAVVIGRSNIVGKPMAQLLLAKNATVTLTHSRTHNLAKTAKRADILVVAIGRGHFVTKDFVKEGAVVIDVGM---------NRDENGKLIGDVQFDEVSEIASLITPVPGGVGPMTITMLMEQTYQAFKRS 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHESH (Bifunctional protein folD OS=Shewanella sediminis (strain HAW-EB3) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G LA R   P+   CTP G + L+  +G++  G +AV++G SNIVG P SL L     T +  H  T+N EQ   +AD+++ A G    + G W+KPGA+V+DVG   ++   D S      L GDV ++ A   AS ITPVPGGVGPMT+A LL NTL +A++
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLIKTTGIDTYGLDAVIVGASNIVGRPMSLELLLAGCTTTTCHRFTRNLEQKVRQADLLVVAVGKPGFIPGEWIKPGAIVIDVG---INRLEDGS------LAGDVQFDAASENASFITPVPGGVGPMTIASLLENTLYAAEQ 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD2_SPHWW7.206e-3045.18Bifunctional protein folD 2 OS=Sphingomonas wittic... [more]
FOLD_RHOSK9.412e-3042.60Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_RALME9.412e-3044.30Bifunctional protein folD OS=Ralstonia metallidura... [more]
FOLD_METAC9.412e-3041.92Bifunctional protein folD OS=Methanosarcina acetiv... [more]
FOLD_HYDS09.412e-3044.58Bifunctional protein folD OS=Hydrogenobaculum sp. ... [more]
FOLD_CHLFF9.412e-3041.86Bifunctional protein folD OS=Chlamydophila felis (... [more]
FOLD_BRAHW9.412e-3050.00Bifunctional protein folD OS=Brachyspira hyodysent... [more]
FOLD_STRSV1.229e-2942.86Bifunctional protein folD OS=Streptococcus sanguin... [more]
FOLD_STRGC1.229e-2943.45Bifunctional protein folD OS=Streptococcus gordoni... [more]
FOLD_SHESH1.229e-2943.98Bifunctional protein folD OS=Shewanella sediminis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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