CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CAUCN (Bifunctional protein folD OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=folD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 81/171 (47.37%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N G LA     P   PCTP GC+ +LIR  + ++ GK AVVIGRSN++G P + +L     TV+I H+ +++   I  +ADIV+AA G A +V+  W+KPGAVV+DVG          +   G  RL+GDV ++E   +A  ITPVPGGVGPMT+A LL+NTL +AKR  G
Sbjct:  128 NAGRLA--SGLPALAPCTPTGCM-MLIRDAIGDLKGKTAVVIGRSNLMGKPMAQMLLAADCTVTIAHSRSQDLPSIVRQADIVVAAVGRAEMVKADWVKPGAVVIDVGITRFPARDPEAAAAGKTRLVGDVAFDEVREVAGAITPVPGGVGPMTIACLLANTLTAAKRLSG 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_RHIEC (Bifunctional protein folD 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=folD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 81/176 (46.02%), Postives = 113/176 (64.20%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +N G LA    +   + CTP G +  + R+ G ++ G NAVVIGRSN+ G P + LL   +ATV+I H+ TKN  ++   ADI++AA G   +V+  W+KPGA V+DVG     ++  P+ E G    RL+GDV + E   +AS ITPVPGGVGPMT+AML++NT+ +A RA G T
Sbjct:  125 VNAGKLATGDLKTGLVSCTPAGAMVFVRRTHGEDLSGLNAVVIGRSNLFGKPMAQLLLNANATVTIAHSRTKNLAEVCRNADILVAAVGRPEMVKADWVKPGATVIDVG-----INRVPAPEKGEGKTRLVGDVAFREVSEIASTITPVPGGVGPMTIAMLMANTVIAAHRAAGQT 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MESSB (Bifunctional protein folD OS=Mesorhizobium sp. (strain BNC1) GN=folD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 85/175 (48.57%), Postives = 112/175 (64.00%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            LN+G L         +PCTP G + LLI    G ++ G +AVVIGRSNIVG P + LL   +ATV+I H+ T +       ADI++AA G   +V+G W+KPGA V+DVG     VS  P+ E G    +L+GDV Y EA ++A  ITPVPGGVGPMT+AML++NTL +A +A G
Sbjct:  124 LNVGMLGTGAVTKALVPCTPAGAM-LLIEGVRGKDLSGLSAVVIGRSNIVGKPMANLLLAANATVTIAHSRTADLPAACRGADILVAAVGRPEMVKGDWIKPGATVIDVG-----VSRIPAPEKGEGKMKLVGDVAYAEAEKVAGAITPVPGGVGPMTIAMLMANTLAAASKASG 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHORT (Bifunctional protein folD OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=folD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 79/168 (47.02%), Postives = 110/168 (65.48%), Query Frame = -1
Query:  157 LNIGNLAM--RGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L++     E   +PCTPKGC+ LL     ++ GK A+VIGRSNIVG P + LL   + TV++ H+ +++   +    DIV+AA G   +V+G WLKPGAVV+DVG   +  +  P  E G +L+GDV Y  A  +A  ITPVPGGVGPMT+A LL+NTL++ K
Sbjct:  126 VNVGRLSIGQSNGEHGMVPCTPKGCLMLLKGVLGDLTGKTALVIGRSNIVGKPMAQLLLSANCTVTLAHSRSRDLPDLCRRMDIVVAAVGRPEMVKGDWLKPGAVVIDVGMNRLPAA--PGAEKG-KLVGDVDYASAAAVAGAITPVPGGVGPMTIACLLANTLEACK 290          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LARHH (Bifunctional protein folD OS=Laribacter hongkongensis (strain HLHK9) GN=folD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 79/164 (48.17%), Postives = 109/164 (66.46%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTP+G + +L  +G+ + GK+AVVIG+SNIVG P +L L    ATV+I H+ T++  +    ADI++AA G+   V+G W+KPGAVV+DVG   ++           +L GDV ++ A   AS ITPVPGGVG MTVA LL+NTLD+A
Sbjct:  127 NMGRLAVK--MPLLRPCTPRGVMIMLEHAGISVEGKHAVVIGQSNIVGRPMALELLMERATVTICHSRTRDLPEEVKRADIIVAAVGIPRFVKGDWVKPGAVVIDVGINRLEDG---------KLCGDVDFDAAKEHASWITPVPGGVGLMTVATLLANTLDAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHLT3 (Bifunctional protein folD OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=folD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 78/167 (46.71%), Postives = 111/167 (66.47%), Query Frame = -1
Query:  163 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 651
            N+G L +   +  F+ CTP G IE+L R  +E  GK+ V++GRSNIVG P  +L++Q+    + TV++ H+ T +    T +ADI+IAA G A  + G  +K GAVV+DVG   ++ +   S   GYRL+GDV +E A + AS ITPVPGGVGPMT++MLL+NT+ S
Sbjct:  125 NVGRLVLGHLDKCFVSCTPFGIIEILKRYNIETKGKHCVIVGRSNIVGKPMANLMVQKLAYMNCTVTVCHSATPDIATYTKQADILIAAIGKARFITGDMIKAGAVVIDVGINRIEATNTKS---GYRLVGDVDFEAASQKASAITPVPGGVGPMTISMLLANTMKS 288          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CALS8 (Bifunctional protein folD OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=folD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = -1
Query:  169 LNIGNLAMR-GREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 654
            +N+G LA     E    PCTP G IELL R  +EI GK+AVVIGRSNIVG P +LLL R +ATV+I H+ T++ + I   ADI++AA G    V    +K GAVV+DVG     ++ D + +   +++GDV +E   R+AS ITPVPGGVGPMTVAML+ NTL
Sbjct:  115 MNVGMLATGIDFEYSIKPCTPFGVIELLKRENIEIKGKHAVVIGRSNIVGKPLALLLLRENATVTICHSYTRDLKDICKTADILVAAVGKPKFVTADMVKEGAVVIDVG-----INRDETTK---KIVGDVDFETVRRVASYITPVPGGVGPMTVAMLMKNTL 269          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACLD (Bifunctional protein folD OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=folD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LN+G + +   E  F+PCTP G +ELL ++ +++ GK  VV+GRSNIVG P   LL   +ATV+  H+ T +    T +ADI+I A G AN ++   +K GAVV+DVG   +D           +L GDV +EEA   AS ITPVPGGVGPMT+ ML  NT+ SAKR
Sbjct:  125 LNVGKMLLG--EDTFLPCTPAGIVELLKKTEIDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTADITAHTKKADILIVAVGKANFIKADQIKEGAVVIDVGVNRLD---------NGKLAGDVDFEEAKEKASYITPVPGGVGPMTITMLAHNTVKSAKR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_PSESM (Bifunctional protein folD 2 OS=Pseudomonas syringae pv. tomato GN=folD2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 77/166 (46.39%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L+ +GR  L  PCTP GC+ LL  +  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + + + +   ADIV+AA G   ++   WLKPGAVV+DVG   +D       +   RL+GDV ++ A+ + S ITPVPGGVGPMT+A L+ NT+ +A++
Sbjct:  126 NVGGLS-QGRNVL-TPCTPSGCMHLLKETCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCQLADIVVAAVGRPRMIDAGWLKPGAVVIDVGINRID------DQGRSRLVGDVDFDNALDVVSAITPVPGGVGPMTIAFLMKNTVTAARQ 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_POLNA (Bifunctional protein folD OS=Polaromonas naphthalenivorans (strain CJ2) GN=folD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 74/156 (47.44%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  154 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 621
            +P F PCTP GC+++L   G ++ GK+AVVIGRSNIVG P +L+L + +ATV+I H+ T + + +T +AD+++AA G  N++R   +KPGAVV+DVG    +           +L GDV ++    +A  ITPVPGGVGPMT+ MLL NTL++A+R
Sbjct:  134 QPGFWPCTPYGCMKMLESIGYDLRGKHAVVIGRSNIVGKPMALMLLQKNATVTICHSATADLKAMTLQADVIVAAVGKRNVLRADMVKPGAVVIDVGMNRNEEG---------KLCGDVDFDGVKEVAGYITPVPGGVGPMTITMLLVNTLEAAER 280          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CAUCN2.165e-3447.37Bifunctional protein folD OS=Caulobacter crescentu... [more]
FOLD1_RHIEC2.165e-3446.02Bifunctional protein folD 1 OS=Rhizobium etli (str... [more]
FOLD_MESSB2.827e-3448.57Bifunctional protein folD OS=Mesorhizobium sp. (st... [more]
FOLD_RHORT3.693e-3447.02Bifunctional protein folD OS=Rhodospirillum rubrum... [more]
FOLD_LARHH3.693e-3448.17Bifunctional protein folD OS=Laribacter hongkongen... [more]
FOLD_CHLT33.693e-3446.71Bifunctional protein folD OS=Chloroherpeton thalas... [more]
FOLD_CALS83.693e-3451.53Bifunctional protein folD OS=Caldicellulosiruptor ... [more]
FOLD_BACLD3.693e-3447.31Bifunctional protein folD OS=Bacillus licheniformi... [more]
FOLD2_PSESM3.693e-3446.39Bifunctional protein folD 2 OS=Pseudomonas syringa... [more]
FOLD_POLNA4.823e-3447.44Bifunctional protein folD OS=Polaromonas naphthale... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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