CN188899

Overview
NameCN188899
Unique NameCN188899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5773 contig Csv1_Contig5773:964..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN188899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_OPHHA5.013e-1597.44Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NEUCR5.013e-1597.44Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_MOUSE5.013e-1597.44Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE5.013e-1597.44Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA5.013e-1597.44Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_KLULA5.013e-1597.44Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_ICTPU5.013e-1597.44Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN5.013e-1597.44Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE5.013e-1597.44Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO5.013e-1597.44Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188899 ID=CN188899; Name=CN188899; organism=Citrus sinensis; type=EST; length=304bp
TTTTTTTAAAACTAGTGCTTATATTATTATTACCAATAGAAAGAGGAAAT
TACGCCCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAA
GCAAAGCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCA
AACGCGGACACATCCACATTTATTTTTTTAGAAGTCACCACCACGGAGAC
GGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGA
GTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTC
CGGA
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