CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:370..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.740e-43
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLL DPNPDDPLVPEIAH+YKTDR++YE +AR WT+KY++
Sbjct:   54 IHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 75/94 (79.79%), Postives = 87/94 (92.55%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLL D NPDDPLVPEIAH+YKTDR KYE TAR WT+KY++
Sbjct:   55 IHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+L DPNPDDPLVPEIAH+YKT RA+YE+TAR WT+KY++
Sbjct:   54 IHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.320e-42
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.941e-42
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR +Y   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147
[Close]
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.842e-42
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = -3 
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WT+KY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBC4_SCHPO7.740e-4380.85Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_YEAST1.320e-4279.79Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_MAGGR1.320e-4280.85Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D2_XENLA1.320e-4282.98Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.320e-4282.98Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.320e-4282.98Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.320e-4282.98Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.320e-4282.98Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC2_CAEEL2.941e-4281.91Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBCD1_DROME3.842e-4281.91Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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