CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  245 IHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAK-YETTARSWTQKY 520
            I  P +YP +PP + F TK+FHPNI+   G ICLD+LK  WS   T+  V  SI +LL  P  D PL  +  ++ +    K +++ AR +T+ Y
Sbjct:   54 ISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  263 YPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTAR 502
            YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L  +PN +DPL  E A + + +   +E   R
Sbjct:   89 YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = -3
Query:  296 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--------WSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYK 520
            I FPP+YP++PPK+ F ++++HPNI  +G +C+ IL           WSPA  I  VLLS+ SL  +PN D P   + A  Y+
Sbjct:   54 ITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYR 136          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            + FP DYP KPPK+ F ++++HPNI+  G++C+ IL             +E+W P  T+  +LLS+ S+L DPN + P   + A M + + A+++
Sbjct:   57 LDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  248 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 520
            + FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ DR +Y    R   +K
Sbjct:   59 LKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKY+
Sbjct:   55 VDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKY+
Sbjct:   55 VDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKY+
Sbjct:   55 VDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  254 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWT 505
            D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W+P+L +  VL  +  LL +P P+  L  +   M   +  +Y   AR +T
Sbjct:   68 DFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYT 151          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  260 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARS 514
            F   YP +PP V     ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +PN  DPL  + A     D  ++ET  ++
Sbjct:   83 FRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQA 167          
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBCX_DICDI3.747e-1340.43Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UB12L_ARATH3.747e-1341.25Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC_ASFK54.893e-1342.17Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC7_CAEEL4.893e-1335.79Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC7_SCHPO6.391e-1332.69Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2H_MOUSE8.347e-1335.79Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN8.347e-1335.79Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN8.347e-1335.79Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC22_ARATH8.347e-1340.48Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBC12_ASHGO1.090e-1236.47NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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