CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:370..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.766e-24
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++A  +K++ A+   TAR+WT+ Y+M
Sbjct:   56 LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL  PNPDDPL   IA  +K++ A+   TA+ WT+ Y+ G
Sbjct:   58 LFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL  PNPDDPL   IA  +K++ A+   TA+ WT+ Y+ G
Sbjct:   58 LFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TDR K++  A+ WT +++
Sbjct:   89 IIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNI-NSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+L DPNPD+PL  EIA  +KTDR  +  TA+ WT+KY+
Sbjct:   55 IDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.518e-22
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = -3
Query:  242 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 505
            DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++A  +KT+  +    AR WT+ Y+
Sbjct:   61 DYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA  WT+ Y+
Sbjct:   56 IEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.837e-22
Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = -3
Query:  239 PPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 511
            P  YPF+PPK+ F T ++HPNI+S G ICLDILK      W PAL IS VL SI  L+ +PNPDDPL+ +I+  +K +RA + + A+ WT+K+++
Sbjct:   58 PERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.285e-21
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -3
Query:  224 IHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG*EGL 520
            I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  Y+    G+
Sbjct:   57 IEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.862e-21
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  239 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 505
            +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +KT+ A+   TAR+WT+ Y+M
Sbjct:   62 EYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBE2N_RAT2.766e-2453.19Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC36_ARATH2.341e-2353.68Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH2.341e-2353.68Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
COP10_ARATH6.812e-2347.31Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCB_DICDI1.162e-2253.19Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBE2N_DICDI1.518e-2255.68Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_YEAST4.416e-2251.06Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2T_XENLA9.837e-2250.53Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC1_SCHPO1.285e-2146.00Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UE2NL_HUMAN2.862e-2152.81Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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