CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.165e-20
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   Y+
Sbjct:   60 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.398e-20
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K ++  +   AR WT+K++
Sbjct:   55 VHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  242 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 520
            I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL +PNPDD L+ E++  YK +R  ++  AR  T+KY+
Sbjct:   68 IQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  254 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 520
            + F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  ++ +Y     E   +SWT
Sbjct:   57 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  242 PPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 511
            P  YPF+PP++ F T ++HPNI+S G ICLD+LK      W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K ++  +   AR WT+K++
Sbjct:   58 PERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  254 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTAR-----SWT 520
            + F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   + +Y    R     SWT
Sbjct:   57 LQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  248 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 520
            I F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL DPNP+ P     A +YK +R +YE   ++  ++
Sbjct:   57 IEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  278 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKY 520
            +HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  ++ +Y
Sbjct:   57 LHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  254 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 520
            + F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   57 LQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.679e-19
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  254 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 520
            + F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y     E   +SWT
Sbjct:   57 LQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBE2K_BOVIN3.165e-2050.00Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2T_BOVIN5.398e-2043.30Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC37_ARATH7.050e-2048.45Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC2_WHEAT7.050e-2048.94Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2T_HUMAN1.571e-1945.74Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC1_ARATH1.571e-1948.94Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBCD6_DROME2.051e-1947.25Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC3_ARATH2.051e-1953.09Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_MEDSA2.051e-1947.87Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH2.679e-1947.87Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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