CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.968e-19
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  242 PPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYS 511
            P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K ++  +   A+ WT+ ++
Sbjct:   58 PERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  Y+ G
Sbjct:   60 IKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  275 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYE 520
            I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   57 IEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  257 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 520
            + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  RSW
Sbjct:   57 MQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBE2T_MOUSE5.968e-1945.74Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBCD4_DROME1.018e-1846.88Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2B_RAT1.736e-1848.78Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.736e-1848.78Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.736e-1848.78Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.736e-1848.78Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.736e-1848.78Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2A_MOUSE2.268e-1848.78Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.268e-1848.78Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_TRIHA3.868e-1846.24Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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