CN182136

Overview
NameCN182136
Unique NameCN182136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 2
Query:   41 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 457
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  + GG F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   25 KKASAAQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 51/151 (33.77%), Postives = 85/151 (56.29%), Query Frame = 2
Query:   56 ASKRINKELKDLQKDPPAS----CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 493
            ASKR+ KEL+DLQK+ P      CS     D++  W A ++ P   P+    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   53 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 490
            M+S    +E+ DL K   +      + D M  +     GP DS + GGV+ V +     YP+K P + F  K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+  YE   + + ++YA
Sbjct:    1 MSSPSKRREM-DLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   41 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 457
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   41 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 457
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 52/165 (31.52%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    8 QTQTLRPQSLLRNSQMASK-----------RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 469
            Q Q  + Q L +N+  + K           R+ K++++L+  P    +   + +        I+ P +  + GG F  +  F   YP  PPKV    K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   D+ ++    R
Sbjct:    6 QLQQQKQQQLAKNAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   41 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 457
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 59/159 (37.11%), Postives = 78/159 (49.06%), Query Frame = 2
Query:   47 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV-----AFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 493
            SQ    RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   69 SQQCILRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETMRVAV 225          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 48/155 (30.97%), Postives = 82/155 (52.90%), Query Frame = 2
Query:    5 NQTQTLRPQSLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 469
            +Q+   R  S ++       R++K++ +L        S     +D+ +++ TI  P +  +  G F+ S      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  E A + + +   +E   R
Sbjct:   15 SQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  125 PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-TDRAKYETTARSWTQKYA 490
            P+ D +F W A I GP  SPF   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K  D   Y+     +  KY+
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          
The following BLAST results are available for this feature:
BLAST of CN182136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC12_XENLA5.064e-1935.00NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UB2L6_BOVIN5.064e-1933.77Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC4_WHEAT8.638e-1932.43Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_MOUSE8.638e-1934.29NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN8.638e-1934.29NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_CANGA8.638e-1931.52NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_BOVIN8.638e-1934.29NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBE2Z_DANRE1.473e-1837.11Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UB12L_ARATH1.473e-1830.97Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBCX_PICAN4.287e-1834.25Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182136 ID=CN182136; Name=CN182136; organism=Citrus sinensis; type=EST; length=709bp
CAATAACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCCC
AGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGAC
CCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTG
GCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTAT
TTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAG
GTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAG
CATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATAT
CCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGAT
GACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAA
ATATGAGACTACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGTTAAG
AGGGGCTAGGCTGTATGCCCCTGAGAACATTAATGGCTTGTGGTCCTATT
AGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTTGG
TTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCAAATT
TAGCATTGTTCTTCAATACTTAAATTATAATTTACTGCAGAATTGAGCTG
CCTTTGCCT
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