CN182136

Overview
NameCN182136
Unique NameCN182136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:161..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   47 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 385
            S+ + KR+ KE K +  +PP   SA P  +++  W   I GP  +PF  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 2
Query:  149 WQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 454
            W        DS +AG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   59 SKRINKELKDLQKDPP--ASCSAGPVADD--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 370
            +KRI KEL  +    P  AS S     D+  +   +  I GP D+P+A G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  170 PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 487
            P +  + GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  +R  +    R +  +Y
Sbjct:   67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 34/125 (27.20%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   32 SLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 397
            S+ R    A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:    5 SVKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   56 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 397
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CN182136 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   56 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 397
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
The following BLAST results are available for this feature:
BLAST of CN182136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC6_DEBHA2.061e-1231.90Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
Y1A1_ENCCU5.996e-1230.17Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC17_CAEEL7.830e-1239.17Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBC12_CAEEL1.336e-1134.51NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2J2_BOVIN2.278e-1127.20Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]
UB2J2_MOUSE5.076e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN5.076e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182136 ID=CN182136; Name=CN182136; organism=Citrus sinensis; type=EST; length=709bp
CAATAACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCCC
AGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGAC
CCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTG
GCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTAT
TTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAG
GTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAG
CATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATAT
CCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGAT
GACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAA
ATATGAGACTACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGTTAAG
AGGGGCTAGGCTGTATGCCCCTGAGAACATTAATGGCTTGTGGTCCTATT
AGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTTGG
TTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCAAATT
TAGCATTGTTCTTCAATACTTAAATTATAATTTACTGCAGAATTGAGCTG
CCTTTGCCT
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