CN182135

Overview
NameCN182135
Unique NameCN182135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.712e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P
Sbjct:   56 KVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAP 116          

HSP 2 Score: 29.261 bits (64), Expect = 3.712e-17
Identity = 12/29 (41.38%), Postives = 20/29 (68.97%), Query Frame = -2
Query:  299 IKDGFESGKDLVVSVQCAMGEEQINALKD 385
            ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:  124 LQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.276e-17
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H V +DIF GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P
Sbjct:   56 KVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAP 116          

HSP 2 Score: 28.4906 bits (62), Expect = 6.276e-17
Identity = 12/25 (48.00%), Postives = 18/25 (72.00%), Query Frame = -2
Query:  299 FESGKDLVVSVQCAMGEEQINALKD 373
            F+ GKDL+V++  AMGEE   + K+
Sbjct:  128 FDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 115          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.464e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H V IDIF GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P
Sbjct:   62 KVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMP 122          

HSP 2 Score: 28.4906 bits (62), Expect = 2.464e-15
Identity = 16/37 (43.24%), Postives = 20/37 (54.05%), Query Frame = -2
Query:  287 LLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 397
            L  +I+   E GKD  V VQ AMGEE    +K+   K
Sbjct:  126 LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP
Sbjct:   55 KVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP 115          
The following BLAST results are available for this feature:
BLAST of CN182135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A2_YEAST3.712e-1759.68Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_YEAST6.276e-1758.06Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_CHICK1.087e-1562.90Eukaryotic translation initiation factor 5A-1 OS=G... [more]
IF5A1_RAT1.855e-1561.29Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_RABIT1.855e-1561.29Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_MOUSE1.855e-1561.29Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN1.855e-1561.29Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN1.855e-1561.29Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_NEUCR2.464e-1558.06Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5AL_HUMAN4.132e-1561.29Eukaryotic translation initiation factor 5A-1-like... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182135 ID=CN182135; Name=CN182135; organism=Citrus sinensis; type=EST; length=596bp
GAGGGTAAATTGCATGTTTGAAACAACCAAAAGGTGCTTCGAAGTGTATA
TACAGTCACGTTGGCGGATACAACTTCTGCACACCGAGAACAACCATGTT
TCAACTTTCAAGCAATCAAACAGAATAAAAATACTGTCGATAGAAAACAA
TTAATAATATGGTAAGAGTCATTTTATATGAAATGATGGCATTCATCTTG
AAACCGGACACCAGTAAAGCTACACTACTATCCACCTTCCCACAGCTTTC
AGCAATCTGCATTCTCGATCAAGCAAAAGTCTTTTACTTGGGGCCAATGT
CCTTCAGGGCATTGATCTGCTCCTCTCCCATAGCACACTGAACTGAGACA
ACCAGATCTTTCCCACTCTCAAATCCATCCTTGATCTGTGAAAGCAGATT
TTCATCAGTTTGGAAGTCTCAGGTCATCCTTGGTATTGCCATTCTCAGTC
AGCAGGCTAACAAATCCATCCTCAGAGATATCAATCAGCTGGTAGTCAGT
GCGAGTGACATGAGGAACATCACAGTTGTGGGAAGAGGGGACAATATCCT
CAAGCTTCTTGCCATTGAAGATGTCAATTCCTACAAAGTGACACTT
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