CN182135

Overview
NameCN182135
Unique NameCN182135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:282..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.235e-12
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 596
            K +   IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP
Sbjct:   60 KVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALP 120          

HSP 2 Score: 23.0978 bits (48), Expect = 2.235e-12
Identity = 10/35 (28.57%), Postives = 23/35 (65.71%), Query Frame = -2
Query:  302 DENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 406
            ++++  +I    + GK+ +VSV  A+G+E + ++K
Sbjct:  121 EDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -1
Query:  411 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLP 596
            K H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P
Sbjct:   59 KVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP 120          
BLAST of CN182135 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  408 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPN 596
            K H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP+
Sbjct:   59 KVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPD 121          
The following BLAST results are available for this feature:
BLAST of CN182135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_DICDI2.235e-1251.61Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A1_CAEEL4.728e-1158.73Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A2_CAEEL8.065e-1156.25Eukaryotic translation initiation factor 5A-2 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182135 ID=CN182135; Name=CN182135; organism=Citrus sinensis; type=EST; length=596bp
GAGGGTAAATTGCATGTTTGAAACAACCAAAAGGTGCTTCGAAGTGTATA
TACAGTCACGTTGGCGGATACAACTTCTGCACACCGAGAACAACCATGTT
TCAACTTTCAAGCAATCAAACAGAATAAAAATACTGTCGATAGAAAACAA
TTAATAATATGGTAAGAGTCATTTTATATGAAATGATGGCATTCATCTTG
AAACCGGACACCAGTAAAGCTACACTACTATCCACCTTCCCACAGCTTTC
AGCAATCTGCATTCTCGATCAAGCAAAAGTCTTTTACTTGGGGCCAATGT
CCTTCAGGGCATTGATCTGCTCCTCTCCCATAGCACACTGAACTGAGACA
ACCAGATCTTTCCCACTCTCAAATCCATCCTTGATCTGTGAAAGCAGATT
TTCATCAGTTTGGAAGTCTCAGGTCATCCTTGGTATTGCCATTCTCAGTC
AGCAGGCTAACAAATCCATCCTCAGAGATATCAATCAGCTGGTAGTCAGT
GCGAGTGACATGAGGAACATCACAGTTGTGGGAAGAGGGGACAATATCCT
CAAGCTTCTTGCCATTGAAGATGTCAATTCCTACAAAGTGACACTT
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