CN188898

Overview
NameCN188898
Unique NameCN188898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 74/161 (45.96%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            KLVLLG    GK+SL LR++K  F      T+G AFF++ L +  +++K EIWDTAGQE+Y S+  +Y+RGA AA++VYDIT + SF +A++W+++L+ +  P  +V+ L GNK DL + R+VT +E + +A+   L FMETSAK    V++IF  +A+ L
Sbjct:   21 KLVLLGSSSVGKTSLALRYMKQDFSNVLP-TVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.884e-35
Identity = 81/195 (41.54%), Postives = 116/195 (59.49%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRLPRVQPAPNPSGMVLMDRPGERTAS---ASCC 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+ E+      N+   L GNK+DL   R V+ + A+ +A+  G+ F+ETSAK A NV   F     +I KR+     AP  +G+ L   PG++  S   + CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKL--TPGQQVPSNGGSKCC 201          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.884e-35
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K++++GD G GKSSL+LRF    + E   STIG  F  +T+ +++ T+K +IWDTAGQER+ ++   YYRGA   I VYD+TN+ SF+   + W+Q++      N+   L GNK DL+D+R V A+EA+  A++N + ++E SAKT +NV   F  IAK L
Sbjct:    9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKAL 169          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.884e-35
Identity = 74/173 (42.77%), Postives = 109/173 (63.01%), Query Frame = -1
Query:  262 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK----RLPRVQPAPNP 768
            K++L+GD G GKS L+LRF    + +   STIG  F  +TL ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD T+Q SF   K+W+ E+      N+   L GNK DL++ + V + +A+++A+  G+ F+ETSAK ATNV + F  +A+    RL  +Q  P P
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKP 184          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.291e-34
Identity = 68/157 (43.31%), Postives = 101/157 (64.33%), Query Frame = -1
Query:  298 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NM + L GNK DL   R V+ EE + +A+E+GL FME SAKTA NV + F + A
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.291e-34
Identity = 79/195 (40.51%), Postives = 115/195 (58.97%), Query Frame = -1
Query:  208 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-------PRVQPAPNPSGMVLMDRPGERTASASC 768
            K++++GD G GKSSL+LRF    + E   STIG  F  +T+ +++ T+K +IWDTAGQER+ ++   YYRGA   I VYD+TN+ SF+   + W+Q++      N+   L GNK DL ++R V+A+EA+  A++N + ++E SAKT +NV   F  IAK L       P   PA   S       P  R  + SC
Sbjct:    9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPASTVSLNTASKVPTNRGLTDSC 203          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.686e-34
Identity = 68/170 (40.00%), Postives = 112/170 (65.88%), Query Frame = -1
Query:  259 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++T+     T+K ++WDTAGQERY ++   YYRGA  A++VYDI  QA+++  ++W+ EL+   + N+ + L GNK+DL   R+V+ +EA+ +++++ L F+ETSA  ++NV   F  I  ++  +   P+ S
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHS 184          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.686e-34
Identity = 70/160 (43.75%), Postives = 107/160 (66.88%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD   GKS+L+L+FV  +F    + TIG  F S+++ +ND  +K +IWDTAGQE++ S+   YYRGA  A+IVYDIT + SFE    W+ + +   + ++   L GNKADL   R+V+  EA+ +A++NGL F ETSAKTA NV++ F +  +++
Sbjct:   26 KYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQI 185          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.686e-34
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+     +      + +D    ++AS  CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKSASGGCC 201          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 69/164 (42.07%), Postives = 109/164 (66.46%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            KLV LGD   GK+S++ RF+  +F    + TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AI+VYD++N+ +F    KW++++ + +G  N+++ L GNK DL++ R+V+  E +   +E G+ F+ETSAK   N+  +F +IA  LP V
Sbjct:   11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGV 174          
The following BLAST results are available for this feature:
BLAST of CN188898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB17_MOUSE7.568e-3545.96Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
YPT1_PHYIN9.884e-3541.54Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1_THEAN9.884e-3544.72Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB1D_DICDI9.884e-3542.77Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB2A_MAIZE1.291e-3443.31Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB1_THEPA1.291e-3440.51Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RB11A_DICDI1.686e-3440.00Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB2B_DICDI1.686e-3443.75Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB1B_RAT1.686e-3440.63Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RBH1C_ARATH2.202e-3442.07Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188898 ID=CN188898; Name=CN188898; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTGATTACCTTGGAAGCCACTCTCCAATTCAATTTACCAGTTCATA
CCAATGCAAGATGCATGTACAGTTCTGATATCTCAACAAATAATACACGA
TAGCAAACTTGGAAGGATAAGACTCAAAAAGTTCCTAGTAAAGCTAGAGG
AGCCATTTAGAAGATACAAACAGACAGTGCTCATCACCACCCAAGTATCT
AAGAGCAACATGATGCACTCGCTGTCCTTTCCCCAGGTCTATCCATAAGA
ACCATTCCTGATGGATTTGGTGCTGGCTGCACTCGAGGCAATCTCTTTGC
TATTTCATAGAAAATGTCATTCACATTGGTTGCTGTTTTTGCAGAGGTTT
CCATAAAGAATAGGCCATTTTCCTGGGCATAAGCTTGTGCTTCCTCTGCC
GTGACCTTCCTCGCATCCAACAAGTCAGCTTTGTTACCAGCAAGTGCCAT
AACCATATTTGGATTGCCTTGTGCCTGAAGTTCTTGGACCCATTTCTTAG
CACGCTCAAATGAGGCTTGATTTGTTATATCGTACACAATAATTGCTGCG
GCAGCTCCTCTATAGTACATTGGAGCCAAGCTATGGTATCTCTCTTGTCC
TGCTGTATCCCAAATCTCAAATTTTACAGTAGCATCATTTACAGCTAATG
TTTGTGAGAAAAAGGCAGCTCCAATGGTTGATTCCTGAAACTCAATGAAT
TGGCCTTTAACAAAGCGCAGTACAAGACTAGACTTTCCAGCTCCAACATC
TCCCAGCAGCACCAATTT
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