CN188898

Overview
NameCN188898
Unique NameCN188898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = -1
Query:  286 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 768
            K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T  NV + F + A+ +P
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIP 170          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 78/192 (40.62%), Postives = 111/192 (57.81%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+     +      + +D    + AS  CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPASGGCC 201          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK+DL   + V    A+ YA + G+ F+ETSAK ATNV   F  +A  +
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 70/156 (44.87%), Postives = 101/156 (64.74%), Query Frame = -1
Query:  301 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 768
            K+VL+GD G GKS+L+ RF   +F    +STIG  F ++T+ V +  +K +IWDTAGQERY ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R V  +EA+ +A EN + F ETSA  + NV+  F E+
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 170          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS----GMVLMDRPGERTASASCCS 768
            KLV LG+    K+SL+ RF    F    ++ IG  F S+T+ + D T+   +WDTAGQER  SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GN+ DL D R+V+ EE +  A+   + F+ET AK   NV  +F  +A  LP ++   + S      + +++P E+T S   CS
Sbjct:   15 KLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSREDMSDIKLEKPQEQTVSEGGCS 207          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 75/200 (37.50%), Postives = 119/200 (59.50%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-----PRVQPAPNPSGMVLMDR-------PGERTASASCC 768
            K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL  AR+V  EEA+ +A+ NGL F+ETSA  +TNV   F  + K +      ++Q +P  + + L          PG++ A   CC
Sbjct:   14 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNSPRSNAIALGSAQAGQEPGPGQKRA---CC 210          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 77/200 (38.50%), Postives = 115/200 (57.50%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF----YEIAKRLPRVQPAPNP-------SGMVLMDRPGERTASASCCS 768
            K+V++GD   GKS+L+ R+ + +F    ++TIG  F +Q++ ++   VK +IWDTAGQER+ ++   YYRGA  A++VYDIT  ++FE   +W+ EL    +  +   L GNK DL   R V+ EE ++ A+  GLFFMETSA  +TNV   F     EI   + R Q   +        + + L+    E T + SCCS
Sbjct:   14 KIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKTFSCCS 213          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.756e-34
Identity = 78/193 (40.41%), Postives = 110/193 (56.99%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL-PRVQPAPNPSGMVLMDRPGERTASASCC 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   + V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+ P      +    V +     +++   CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGCC 202          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.905e-34
Identity = 70/169 (41.42%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  262 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 768
            KL+ LG+   GK+S++ RF+   F    ++T+G  F S+T+ + D  V+ ++WDTAGQER+HSL P Y R +  A++VYDITN  SF+   KWV+ ++A+   ++V+ L GNK DL + R+VTAE+ +  ++   + F+ETSAKT  NV  +F  +A  L   + +P P
Sbjct:   33 KLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRTSPPP 201          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.905e-34
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = -1
Query:  205 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG----MVLMDRPGERTASASCC 768
            KL+L+GD G GKS L+LRF    + E   STIG  F  QT+ ++  T+K +IWDTAGQER+ ++   YYRGA   ++VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK ATNV   F  +A  + +       SG     + +D    + A   CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKIDSTPVKPAGGGCC 201          
The following BLAST results are available for this feature:
BLAST of CN188898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_DANRE2.202e-3444.10Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB1B_MOUSE2.202e-3440.63Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST2.202e-3445.00Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPT32_YEAST2.876e-3444.87GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB6C_HUMAN2.876e-3437.82Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6... [more]
RAB25_RABIT2.876e-3437.50Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
ARA4_ARATH2.876e-3438.50Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB1_DISOM3.756e-3440.41Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB41_HUMAN4.905e-3441.42Ras-related protein Rab-41 OS=Homo sapiens GN=RAB4... [more]
RAB1C_HUMAN4.905e-3439.58Putative Ras-related protein Rab-1C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188898 ID=CN188898; Name=CN188898; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTGATTACCTTGGAAGCCACTCTCCAATTCAATTTACCAGTTCATA
CCAATGCAAGATGCATGTACAGTTCTGATATCTCAACAAATAATACACGA
TAGCAAACTTGGAAGGATAAGACTCAAAAAGTTCCTAGTAAAGCTAGAGG
AGCCATTTAGAAGATACAAACAGACAGTGCTCATCACCACCCAAGTATCT
AAGAGCAACATGATGCACTCGCTGTCCTTTCCCCAGGTCTATCCATAAGA
ACCATTCCTGATGGATTTGGTGCTGGCTGCACTCGAGGCAATCTCTTTGC
TATTTCATAGAAAATGTCATTCACATTGGTTGCTGTTTTTGCAGAGGTTT
CCATAAAGAATAGGCCATTTTCCTGGGCATAAGCTTGTGCTTCCTCTGCC
GTGACCTTCCTCGCATCCAACAAGTCAGCTTTGTTACCAGCAAGTGCCAT
AACCATATTTGGATTGCCTTGTGCCTGAAGTTCTTGGACCCATTTCTTAG
CACGCTCAAATGAGGCTTGATTTGTTATATCGTACACAATAATTGCTGCG
GCAGCTCCTCTATAGTACATTGGAGCCAAGCTATGGTATCTCTCTTGTCC
TGCTGTATCCCAAATCTCAAATTTTACAGTAGCATCATTTACAGCTAATG
TTTGTGAGAAAAAGGCAGCTCCAATGGTTGATTCCTGAAACTCAATGAAT
TGGCCTTTAACAAAGCGCAGTACAAGACTAGACTTTCCAGCTCCAACATC
TCCCAGCAGCACCAATTT
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