CN188898

Overview
NameCN188898
Unique NameCN188898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:192..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.779e-37
Identity = 80/205 (39.02%), Postives = 123/205 (60.00%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-----------QPAPNPSGM----VLMDRPGE-RTASASCCS 768
            K+VL+GD   GK+ ++ RF + +F    ++TIG  F ++TL +   +VK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+A  + N+V+ L GNK DL D R V  E+A+ +AQ+ GLFF+ETSA  AT + D F  +   +  +           Q   NP+ +    +L+  PG+      +CCS
Sbjct:   17 KVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCS 221          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.629e-37
Identity = 78/167 (46.71%), Postives = 109/167 (65.27%), Query Frame = -1
Query:  286 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL------DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 768
            K+VLLG+   GKSS+VLRFV   F E +E TIGAAF ++ +  +   +KFEIWDTAGQER+  LAPMYYR A AA++V+D+TN+ SF +A+ WV+EL  +   ++V+AL GNK DLL      + R + A   Q   +   L + E SAKT  N+  IF  + +++P
Sbjct:   14 KVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKVP 180          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 76/193 (39.38%), Postives = 119/193 (61.66%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMD----RPGERTASASCCS 768
            KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S   ++D    +P E+  +   CS
Sbjct:   15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNEGGCS 207          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
The following BLAST results are available for this feature:
BLAST of CN188898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_TOBAC2.779e-3739.02Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT53_YEAST3.629e-3746.71GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
RAB6A_MOUSE4.740e-3739.38Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB2A_RABIT4.740e-3745.00Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB4.740e-3745.00Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE4.740e-3745.00Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA4.740e-3745.00Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN4.740e-3745.00Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK4.740e-3745.00Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA4.740e-3745.00Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188898 ID=CN188898; Name=CN188898; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTGATTACCTTGGAAGCCACTCTCCAATTCAATTTACCAGTTCATA
CCAATGCAAGATGCATGTACAGTTCTGATATCTCAACAAATAATACACGA
TAGCAAACTTGGAAGGATAAGACTCAAAAAGTTCCTAGTAAAGCTAGAGG
AGCCATTTAGAAGATACAAACAGACAGTGCTCATCACCACCCAAGTATCT
AAGAGCAACATGATGCACTCGCTGTCCTTTCCCCAGGTCTATCCATAAGA
ACCATTCCTGATGGATTTGGTGCTGGCTGCACTCGAGGCAATCTCTTTGC
TATTTCATAGAAAATGTCATTCACATTGGTTGCTGTTTTTGCAGAGGTTT
CCATAAAGAATAGGCCATTTTCCTGGGCATAAGCTTGTGCTTCCTCTGCC
GTGACCTTCCTCGCATCCAACAAGTCAGCTTTGTTACCAGCAAGTGCCAT
AACCATATTTGGATTGCCTTGTGCCTGAAGTTCTTGGACCCATTTCTTAG
CACGCTCAAATGAGGCTTGATTTGTTATATCGTACACAATAATTGCTGCG
GCAGCTCCTCTATAGTACATTGGAGCCAAGCTATGGTATCTCTCTTGTCC
TGCTGTATCCCAAATCTCAAATTTTACAGTAGCATCATTTACAGCTAATG
TTTGTGAGAAAAAGGCAGCTCCAATGGTTGATTCCTGAAACTCAATGAAT
TGGCCTTTAACAAAGCGCAGTACAAGACTAGACTTTCCAGCTCCAACATC
TCCCAGCAGCACCAATTT
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