CN188898

Overview
NameCN188898
Unique NameCN188898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:192..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37
Identity = 79/192 (41.15%), Postives = 115/192 (59.90%), Query Frame = -1
Query:  208 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV--QPAPNPSGMVLMDRPGER---TASASC 768
            KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF +  KW+ +++ +   ++++ L GNK DL D R+VT +E +  A+E  + F+ETSAK   NV  +F  IA  LP +       P  +V MD   +R   T   SC
Sbjct:   12 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIKDDPVEPPNVVTMDPIRQRQIVTDEGSC 203          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 73/156 (46.79%), Postives = 106/156 (67.95%), Query Frame = -1
Query:  301 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+V+ L GNK+DL   R V  E AQA+ +  GL F+ETSA  +TNV   F +I
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQI 169          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 72/163 (44.17%), Postives = 111/163 (68.10%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 72/163 (44.17%), Postives = 111/163 (68.10%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 72/163 (44.17%), Postives = 111/163 (68.10%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 72/163 (44.17%), Postives = 111/163 (68.10%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 73/163 (44.79%), Postives = 108/163 (66.26%), Query Frame = -1
Query:  280 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 768
            KLV LGD   GK+S++ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AI+VYDITN+ SF    KW+++++ +   N+V+ L GNK DL D R+V+ EE +A A+E  + F ETSAK   N+  +F ++A  LP +
Sbjct:    8 KLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGI 170          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 72/160 (45.00%), Postives = 105/160 (65.62%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 71/160 (44.38%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  289 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 768
            K +++GD G GKS L+L+F   +F    + T+G  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 82/207 (39.61%), Postives = 124/207 (59.90%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV--------NDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERT----------ASASCCS 768
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++T  V   T+K +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+   + N+V+ +AGNK+DL   R V  E+ Q+ A++ GL F+ETSA  ATNV         +I++ I+K+    Q A   +  +    PG+ T          A  +CCS
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAI----PGQGTTINVDDTSGGAKRACCS 216          
The following BLAST results are available for this feature:
BLAST of CN188898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6B_CAEEL8.086e-3741.15Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
YPTC6_CHLRE1.056e-3646.79Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_RAT1.056e-3644.17Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.056e-3644.17Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.056e-3644.17Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.056e-3644.17Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAB6_DICDI1.056e-3644.79Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB2_LYMST1.056e-3645.00Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT1.056e-3644.38Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAA2C_ARATH1.056e-3639.61Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188898 ID=CN188898; Name=CN188898; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTGATTACCTTGGAAGCCACTCTCCAATTCAATTTACCAGTTCATA
CCAATGCAAGATGCATGTACAGTTCTGATATCTCAACAAATAATACACGA
TAGCAAACTTGGAAGGATAAGACTCAAAAAGTTCCTAGTAAAGCTAGAGG
AGCCATTTAGAAGATACAAACAGACAGTGCTCATCACCACCCAAGTATCT
AAGAGCAACATGATGCACTCGCTGTCCTTTCCCCAGGTCTATCCATAAGA
ACCATTCCTGATGGATTTGGTGCTGGCTGCACTCGAGGCAATCTCTTTGC
TATTTCATAGAAAATGTCATTCACATTGGTTGCTGTTTTTGCAGAGGTTT
CCATAAAGAATAGGCCATTTTCCTGGGCATAAGCTTGTGCTTCCTCTGCC
GTGACCTTCCTCGCATCCAACAAGTCAGCTTTGTTACCAGCAAGTGCCAT
AACCATATTTGGATTGCCTTGTGCCTGAAGTTCTTGGACCCATTTCTTAG
CACGCTCAAATGAGGCTTGATTTGTTATATCGTACACAATAATTGCTGCG
GCAGCTCCTCTATAGTACATTGGAGCCAAGCTATGGTATCTCTCTTGTCC
TGCTGTATCCCAAATCTCAAATTTTACAGTAGCATCATTTACAGCTAATG
TTTGTGAGAAAAAGGCAGCTCCAATGGTTGATTCCTGAAACTCAATGAAT
TGGCCTTTAACAAAGCGCAGTACAAGACTAGACTTTCCAGCTCCAACATC
TCCCAGCAGCACCAATTT
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